RNA id: TCONS_00027404


Basic Information

Item Value
RNA id TCONS_00027404
length 703
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_013602
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 43589544 ~ 43592912 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTCGTTTACGACTCCCCACGACACTCTACTTCAAGGAAATCATGCAGAAATCATGAcaaaatcatgtgatctgaccagggctcAAAACTCATTTCATGCTTTATGAGTCCATCTTTTTTTCTCTAACTCTTCATTCAAATTAAACACAAGATTAAAACAGACGTCTGATTTTCTAACTGTGCATTTCATGCTGGGGAAAAGAAAGTGATgccttttttttaaaatggttgaCTTAGTTCGTTTTAACTCTGACCTAATTTGCATAACAAATTTAGAGAACAAACCACGACTCTGTTGTTGAGTATATGCTGTTTTCTCTCTATACCTTCATCTCTGGAAAGCTGTTAAATATTCATCGGAAATCAGTCTTTGTTGTGTTTCTTCAAGATCACGCTGAGATTTTCACTGTTATCTCACAAGCGTGCGAGTAAGGACAGCAGCTTCAGAGCATTCATCAGTCACTTATTCAAACAGCGCTTAGATGAAGTACCACTCTTTTGtccacacacacaaaactttTTCATCTTGTGTGGCTTCAAATCCCCTGATGCACAAACACAAATGTGCATTGCAATGCTCCAAGAGACTGCAAATCCATGTCCCAATTAGTATTTGTCAAAGAGGAAAAAGACAAACTAGACTGTTTTCTttctccatttggcattccactgttaccagtttgaccgGTGGCTCGCCGCGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027403 lncRNA downstream 139203 43447319 ~ 43450341 (-) True XLOC_013601
TCONS_00027402 lncRNA downstream 730288 42858003 ~ 42859256 (-) True XLOC_013600
TCONS_00027400 lncRNA downstream 982875 42460888 ~ 42606669 (-) False XLOC_013598
TCONS_00027399 lncRNA downstream 982875 42460888 ~ 42606669 (-) False XLOC_013598
TCONS_00027401 lncRNA downstream 1031136 42515621 ~ 42558408 (-) True XLOC_013598
TCONS_00027405 lncRNA upstream 22795 43615707 ~ 43647433 (-) True XLOC_013603
TCONS_00027406 lncRNA upstream 299925 43892837 ~ 43894135 (-) True XLOC_013605
TCONS_00027407 lncRNA upstream 664845 44257757 ~ 44258660 (-) True XLOC_013608
TCONS_00027408 lncRNA upstream 1003882 44596794 ~ 44606376 (-) False XLOC_013613
TCONS_00027409 lncRNA upstream 1003882 44596794 ~ 44606783 (-) False XLOC_013613
TCONS_00026742 mRNA downstream 758981 42781728 ~ 42830563 (-) True XLOC_013599
TCONS_00026741 mRNA downstream 804075 42781622 ~ 42785469 (-) False XLOC_013599
TCONS_00026738 mRNA downstream 1194383 42150949 ~ 42395161 (-) False XLOC_013597
TCONS_00026743 mRNA upstream 254024 43846936 ~ 43866001 (-) False XLOC_013604
TCONS_00026744 mRNA upstream 254222 43847134 ~ 43857089 (-) False XLOC_013604
TCONS_00026745 mRNA upstream 254243 43847155 ~ 43866526 (-) False XLOC_013604
TCONS_00026746 mRNA upstream 272989 43865901 ~ 43880020 (-) False XLOC_013604
TCONS_00026747 mRNA upstream 274271 43867183 ~ 43884044 (-) True XLOC_013604
TCONS_00026709 other downstream 2881020 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026696 other downstream 3973639 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026695 other downstream 4002879 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026691 other downstream 4401143 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026673 other downstream 6174191 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026751 other upstream 472121 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026761 other upstream 1006894 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026763 other upstream 1023089 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026769 other upstream 2026646 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026799 other upstream 3910865 47503777 ~ 47503894 (-) True XLOC_013649