RNA id: TCONS_00026746


Basic Information

Item Value
RNA id TCONS_00026746
length 6780
RNA type mRNA
GC content 0.41
exon number 13
gene id XLOC_013604
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 43846936 ~ 43884044 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtGGAAAACATTTGAAATCGCCCATGTTAACTAATTTGAGAGAAGGGAATGGACAGAACAATTGAAAAGACTAACACTGGCTTCCTGGCCCCTTGTCTGTGAAACTTTCCTTTTGCAGAGGAGAAATTCACTCATTAATGGAAGGATAATTGAAGCTAATCTTCCTGCTTATAGCATCTGTGACCTGTTGCTTGAGTGACATTCATATTGAGATGTTCCACAAGAGACTTTTATATTGAGGAACAAGGAACTGGTAAAAAAATTTtgcttgaacttttttttttttttttttttgcttttgtgcgCTTTGGACACTGAGAAAGCTGTGGGAAGGACGACttgcaaattaatttttttgcaaGACCATCAAGAGAAAGTATTATCTCCACTGTTGTTTGTCGCTCACTGTTTCAAGAGAGAATATTTAAGTCATGAGTACAGCCAGAATGGAGAACCCAGTGATTCTGGGACTGTCCAATCAGAACGGCCAAATGCGAGGTTCTGTGAAGCCAGCAGGGGGTCCCGGTGGAGGTGGAGGGGGGTCCCAAACAACACAGCCTGCCCAGGTCAAAGCCTCTAGCACAGTCAACAATGGCAACTCCCAGCCTGTACCCACAGCCAACACTATCATCAAGCCTGGAGATGACTGGAAGAAGAATCTAAAGCTTCCTCCAAAAGATTTGCGAATGAAAACATCAGATGTGACGGCGACCAAGGGAAATGAGTTTGAAGATTATTGCCTAAAACGAGAGCTGCTTATGGGCATCTTTGAAATGGGCTGGGAGAAACCATCACCTATACAGGAGGAGAGCATTCCCATTGCGTTGTCTGGGAGGGACATTCTGGCCCGAGCCAAGAACGGCACAGGAAAAAGTGGCGCCTACCTCATTCCCTTACTTGAACGCATAGACCTGAAGAAAGACAGCATACAAGCGGTGGTCATTGTGCCCACTAGAGAACTGGCTCTTCAAGTGAGCCAGATCTGTATCCAGGTCAGCAAACACATGGGCGGGGTCAAGGTCATGGCAACTACAGGTGGAACCAACCTTCGTGATGACATCATGAGACTTGACGAAACTGTGCACGTCGTCATCGCCACTCCAGGAAGAATTTTAGACCTCATCAAAAAGGGAGTGGCCAAAGTGGGTCAAGTGCAGATGATCGTGTTGGATGAGGCAGATAAGCTCTTGTCGCAGGATTTTGTACAGATGATGGAGGAGATTCTGAGCTCTTTGTCTAAACAAAGGCAAATTTTGCTGTACTCTGCCACATTCCCACTGAGTGTGCAAAAGTTCATGAACTCCCATCTCCAGAAGCCCTATGAGATAAACCTGATGGAGGAGCTGACCCTGAAGGGGGTTACTCAGTATTATGCCTATGTGACTGAAAGGCAGAAAGTCCATTGCCTTAATACTCTATTCTCTAGGCTCCAAATCAATCAGTCTATAATCTTCTGCAATTCGTCCCAGCGAGTGGAACTCCTGGCTAAAAAGATCTCACAGCTTGGGTACTCCTGTTTCTACATTCATGCCAAGATGAGGCAGgaACACAGAAACCGCGTGTTCCATGATTTCAGAAACGGCTTATGTCGAAATCTCGTCTGCACTGATCTCTTCACGAGAGGAATTGATATTCAAGCTGTGAATGTGGTGATCAACTTCGATTTTCCCAAACTCGGGGAGACGTACCTTCATCGCATTGGCAGATCTGGCCGATTTGGACACTTGGGTCTTGCCATTAACTTGATCACTTATGATGACCGCTTTAACCTGAAAGGTATTGAAGAACAGCTGGGTACTGAAATCAAGCCCATTCCCAGCAGTATTGACAAGAGTCTATATGTGGCCGAGTACCACAGTGAGAGCGGAGAGGAGGTTAAACTGTGAGCAGGAGAGATCACCAATCCTTTGTCCCCTATCCCACCCTTTTCGTTCCCTACTGTGTCTAGGGAATaggggactttttttttcttttttttcccccctcctTTCAACTATATCTTATTTCTGTCTTCCTCTACTCCCACCTCCCtctttttttcgttttctttttttctctcctgtCTTGTGCCACCACAAGGAATGTCGTGTCGATGGCCCAATATTCGGGAAGGACTCATGGCCCACTAAAGGACTGCTATACCAATATTTTCATCCTGAAGAATTCAGATCACTTGATGAGGAGGGAAAGAGGGGACATGAGGATTTATCAcccaaggaaaaaaaaacaattcatcgCCTTTAAGCACATCCACACCCCACAGTCTCTGTCCCTCTGCTCGTATTCATGTTTCTAGTCATTTGAAACAAGTGCCTTAACAGTCTAACTTGTTCAAAAAGTAATAacctgatgattttttttttctcctcctcattcaacatcattttttTACTACTCTGGCTTTTTGGTGTTGCTTGTCTGCCCCTACACGTTTGGCATCAGAAGAATAATTTAGCATTTGTCACCTGTAGTTTATTGGGGCAACAAAGAAAAAGATTGCGCAGTGGGAGAGAGGATGAGGCAGCAAATTGTGCCGTACTTTGACTATGTTGTGAAAAGAAGCCCCTTGGAGAACTGAGATGAAATCAGTGAGCATAATGACAATGATAGGGGCTGATCTTCTTGTGGCAAGCTTTCAAAAGTCCCACACGGCTCAAGGATtcacaaggatttttttttttttgttcccttCATCTGCTCATGGAACATGCCATGCCTCTAGAGACCCGTAACTCTTTCCCCCTCTGTCTTCAGCGGGCCAACACTAAGAGACTAGACCAGACTCAGACCAGCCTTTCTCATTGGCCATGAGGAATCTCTCTTTGAGATGAATGTGGATTTCTTTCTTTTACTCCTccctcattttcttttttctatccTCCCAATTTCATCCTGATTTCAGTGCAGTTTTGCATTCTTGGGTAGGCACTCTGTCCTAAATGTGCCATTTATACAGATCTGGCgcatttgtaaacattttgtaaatacttcatttattttttttaaatggattgtTTTAAAGCAAGCTAAAAAGGCTGGATGAACATTtgagaagaatgttggaaagatCTTTAAAATCCAGGATCCTGTCAGCACTGGATGGCACTTTTGTTTGCTTATTCCCCCTTTTCCATCCCCCTTCATGGGGAaataagtttaaagtttaaacctTTCCTGGTAATGCACCGCCAGTGTTTTGTTATCGTAAGAAATGAGTTCACACttgctttattctttattttaaaactCGAGACTCCGTTCAAAGGTTTTGAGTGTAATCCTCTGGTGGTTTCAGCAGGTGGTGCAATTGTTCAGATTTGCAGTTATTAACTCATCCGTTTTCCAGTGTTGACATGTTTCCTGACGTGGGTCGCTCAAATAAATGGCCTCATTTGCGCGTTGTGAAAACATGAGGCTTAATTGCTTTCCAGCCTTTTGCTTGTAACACTGACTTATGAGCACTCAGCGGGGTCCCTGAGCCTGGGTGACTCTAATCATAgagataatttaatattttcatcaTGTAATAGTGCTACTCGCTGCAGTGCAGCTCAAATTGGCAACGTGCAAAAATCTAGAATTTCTAAGCGAGATGTGTAGCTGTTACATGGGTCTGTGTTCACTGCCACCGGCACTAGGACATGACTTCAAACAGACCGTTAAGGGTGGGAGGATCGAAAGACTTGGTGGTTCCCAttggaaaaaggaaaaaaaaatggacaaaaatataCTCAACTGGATGCCAAGACTTGATGGACTGACATAATGTAGCGGCAGAGACATGCAGTGCATTGTGAGTcagcaggcttttttttttttgtaaaaagacCATGTTCTTAAGATGCTGCACAGACTTTACAGAAGAATCTAAATCTTTGCAGTGAGAGCTGCACTTAAGTTTGAACTTTAGTTCAAGGGTTGGGCAATAATAAAGGCTGCACACGTGCTTGGAGCACTTCCTCGGTTAGGCTAGAGGTGTAAAGACCATAAGGgagtttaatctttattttatttaatttttttgaggaAGTATTGTGGCAGGGATGAGGGTATTTAACATGGGATGTGGGTATTACATGGGTGCTGATAaccaaatgatttattttttttattttttatttttttgcagcagaATATTCATCCCCATCACCCCAAACACTAATAGCCTTTAAAGATTTCTGAGTGATTTATTTTCCCCCTCTCTGGGGATTGAAATGGGCTTGCTTGAGACACTTTAGCCCTTCTGCTGCTTTGTCACTAAGTTATGCATTTGACCCGTGATGTTTTGAGGGTGTTTCCTTTTATATGGGGTGGGTTAAGCTTGGGAGGGATACAATTTATGTCTTTTTATGATTATTAGCACAATTTGCGTTAAATTCTTTACGTTGGACTTCAACATCACCAACGTCCCCATTAGATAGTCAATTACAGGTGagatgtttaattaatttttttttttttttttggattagtaTTGTCGACTGTGAAGGCTATTGATATAATTAAGGACGTTCGTACTAACCGTGTGGTTGGTTACCCAAATATTGGCCCAGATTATTATTTATCACAATCCTCAAAATGCAGCCTTTTCCACAGTGGCCATGCTTTAATCCGGCCTCATATTCTCTTCTCTATTGCGTTCCCCTCTGGTGTGCACAGATTGTTCGCCCAACTAATCCGCTTTGGTTTCTTCTGGGGGCTTTTTAAACCGATCTGCTCTAGAGAGGAGAATGCGAGTTTCTGGGCGTTTGGCAGCAGCCCAGTGTTTTTCAGTAACCACTTGCTGTGGAAGTCACAGTTCTTTCTTGTGATGCTGTAAATCAGCATGTGATTGGATGTGCTGTGGTCTTTGCCATGGTGGTTGgggttttgatttgttttattttcttttatttttttattttaagctttgGTTTTCCCTTTCATTTTGAAGAATAGAGTTGGAGAACATCTCACCTGTTTAAGAGTTGTTTTCTGAAGCTTAAGCTAATTACATAATGGAAATCCACTCATTCTTcagtgtattattttatttatttttatttaatttttgtattggGTGGgtgggaagtttttttttttttttttttttttttggctgcccTGATGTATCGTTCTAATTCCAGCACTTTCCATCTTTGTGTTCAGTGTTGGGAGTATTTGGATACATCAGTTTGGGTTGGTGGGTGGGAGGGATGTGGTAAATTGGcttaaaagaaaaattaagatGAACAATTAGGAGTTCAGGGTAAGGAATTCAATCTTTAACCTTTGCCCTCAAATTTGAgatgtttttctttctgtttggaTACTGCAAATGAACAACCAAATTCAAGAGAAATCCAAAGTATTGTTTTGTTTCTCCTTTTCAATTTGGACCGTTTCAATTGGCTTTTGTTTCTCAGTGATGCTGCATTTTTAAAGAGTTGAGATGTGTGAATGCAATGGTTAACATCTGTCATGGTTTTTGTTTGATAATAAAGCTCACTGAAGTTCCATGTATGTGTTTAAGGTgtctttattttgtaaaaaataaatgtttgaatttaGTGTTAAGTATACACATGTAAAACTACTGCATATGGAGGATCCGTGTCCTGCAGAATTTGGGATTAAGCAGATCCAGCACCTTTTCTGGATCACCCAGAGTGGTAATCACTGATTTTATACCCAGTGGTTGTGCCCGGGGGCTGCTTTAGGGCACTCTATAATGGGTTTTTTTAATCTTTGTATTTGTGAAATGGTTGTTAGACCTGCAGTTTTTTTCCTAGTGAATAAGACTTTGCTTTGTTGGAGCCAAAAAGGACACTTGCCCTCCATAATTGAGTTTAGACACTTGGAAGTTTATTGACAATATGAAATGCTTGTTTTATTCATGCAGAAACCACTTCTGTTGTACCTTGTCTTTGTATGGTGTAGTAAAGGCTACAGTAATGTACTTGCTCTAGACTTCAGCATTGAATGTCAAAGTAAACATTCCCCTTATGTAACATTTTAATGCTGCCACTTCCAGCAATCTGCATACTGATAGGCTTACGAGCCATTGAACATGATTCATTGGTGTAGTGCAGCTGACCTCTAACCCTCCTATCATTGATAAAAAGCTCAAGCTTTAAATCTCTGGCGATAGTTTACTGACTTCATTACTACTATAATTCAACTCACTAAGATGCACTGCTTAATTGTCATTTCGTCGACCCTCCTCTTCTCATCCGGCGATGCACTCCTGGCTCCTTGTGACAGGTTAGTTCCCATAACCAACCTTCATGGTCAAGATTTCATTATGCTTCTCTAAATTAGCCAATGAAATGGCACCATTAAAACATTGAGGTTGTTAATAGTTCCCACTAAACACCTTTTGTGAGTCTCTGACATGTCTAATGACTTCTGCATTTCATTGACCTTTAAAGATGGTCCTCAATGTGTTATAAAAGACTTCAAGAGCCACCAGATGGCATTCTCATTATGCCTGAACTTTGAGTCTGTGATAAAGCAGGTGGAGTGTTGAATGTTGCGAAGCTGAGCTTTGAACCTTCATCAAAGAACCGTAGTAGAGAGAGTGTTATTGATCTTGGTTTTATGAGCTTAACCTGTGAGTGCCAGACAAGAAGTGGGCAGACTAACAAGCTACCCTGTTACTCTGCGCATCAGCTGTCTGACATGTTTTTGTTGCCACCAGTCAGATCTACTGCACTGGAGAAGTCCTCCGACAGGTCCAGATGGCTAAACTGTTTGATGATGACAAGTACTTTGTAGATATGACGTTAACTACAGCTCCCG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005991 trehalose metabolic process biological_process
GO:0004555 alpha,alpha-trehalase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00500 Starch and sucrose metabolism
ko00537 Glycosylphosphatidylinositol (GPI)-anchored proteins

ZFIN:

id description
ZDB-GENE-070912-83 Predicted to enable mRNA binding activity. Acts upstream of or within response to heat and stress granule assembly. Located in cytoplasmic ribonucleoprotein granule. Orthologous to human DDX6 (DEAD-box helicase 6).

Ensembl:

ensembl_id ENSDART00000185638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027405 lncRNA downstream 218468 43615707 ~ 43647433 (-) True XLOC_013603
TCONS_00027404 lncRNA downstream 272989 43589544 ~ 43592912 (-) True XLOC_013602
TCONS_00027403 lncRNA downstream 415560 43447319 ~ 43450341 (-) True XLOC_013601
TCONS_00027402 lncRNA downstream 1006645 42858003 ~ 42859256 (-) True XLOC_013600
TCONS_00027401 lncRNA downstream 1307493 42515621 ~ 42558408 (-) True XLOC_013598
TCONS_00027406 lncRNA upstream 12817 43892837 ~ 43894135 (-) True XLOC_013605
TCONS_00027407 lncRNA upstream 377737 44257757 ~ 44258660 (-) True XLOC_013608
TCONS_00027408 lncRNA upstream 716774 44596794 ~ 44606376 (-) False XLOC_013613
TCONS_00027409 lncRNA upstream 716774 44596794 ~ 44606783 (-) False XLOC_013613
TCONS_00027410 lncRNA upstream 751551 44631571 ~ 44634146 (-) True XLOC_013615
TCONS_00026744 mRNA downstream 8812 43847134 ~ 43857089 (-) False XLOC_013604
TCONS_00026742 mRNA downstream 1035338 42781728 ~ 42830563 (-) True XLOC_013599
TCONS_00026741 mRNA downstream 1080432 42781622 ~ 42785469 (-) False XLOC_013599
TCONS_00026738 mRNA downstream 1470740 42150949 ~ 42395161 (-) False XLOC_013597
TCONS_00026748 mRNA upstream 16133 43896153 ~ 43993634 (-) False XLOC_013606
TCONS_00026749 mRNA upstream 16151 43896171 ~ 43993614 (-) True XLOC_013606
TCONS_00026750 mRNA upstream 173032 44053052 ~ 44129151 (-) False XLOC_013607
TCONS_00026752 mRNA upstream 401603 44281623 ~ 44285539 (-) True XLOC_013609
TCONS_00026753 mRNA upstream 423133 44303153 ~ 44316920 (-) True XLOC_013610
TCONS_00026709 other downstream 3157377 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026696 other downstream 4249996 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026695 other downstream 4279236 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026691 other downstream 4677500 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026673 other downstream 6450548 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026751 other upstream 185013 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026761 other upstream 719786 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026763 other upstream 735981 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026769 other upstream 1739538 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026799 other upstream 3623757 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

//