RNA id: TU130284


Basic Information

Item Value
RNA id TU130284
length 303
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id G113771
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11438751 ~ 11451565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTTGACTAGGGTAAAGCAGCTCTCTACTCTCCTGTAGTCCTTTGTGTTTCTCCTCATGCTCCTCTGGAAacctctccacttcctcctgggctctcctctccacttccttttcctcctctcgCCTCCTGAGACGCTGCAGTTTAGCACTCTGTTTGTTCACGCTGTTCTGCAACAGCggcaacacctcctcctcctgcacACCGCTGCTGAACGACAGGAACTCTGGCCACAGCTTCAGTAGCTCACTGAACACACACATctactacacacagagagagagacagagagagacagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130271 lncRNA downstream 3089 11434578 ~ 11435662 (-) False G113770
TU130272 lncRNA downstream 3089 11434578 ~ 11435662 (-) False G113770
TU130275 lncRNA downstream 3089 11434578 ~ 11435662 (-) False G113770
TU130276 lncRNA downstream 3089 11434578 ~ 11435662 (-) False G113770
TU130278 lncRNA downstream 3089 11434578 ~ 11435662 (-) False G113770
TU130225 lncRNA upstream 18200 11469765 ~ 11524208 (-) True G113755
TU130317 lncRNA upstream 29364 11480929 ~ 11482264 (-) False G113784
TU130319 lncRNA upstream 29364 11480929 ~ 11482264 (-) False G113784
TU130320 lncRNA upstream 29364 11480929 ~ 11482264 (-) True G113784
TU130321 lncRNA upstream 29677 11481242 ~ 11481898 (-) True G113785
XM_036938010.1 mRNA downstream 35889 11398092 ~ 11402862 (-) True LOC110514530
XM_036937950.1 mRNA downstream 177242 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 177242 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 270113 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 379278 11058984 ~ 11059473 (-) False LOC118937688
XM_036938038.1 mRNA upstream 20374 11471939 ~ 12290703 (-) False LOC110513475
XM_036938043.1 mRNA upstream 20374 11471939 ~ 12290706 (-) False LOC110513475
XM_036938036.1 mRNA upstream 20374 11471939 ~ 12290710 (-) False LOC110513475
XM_036938048.1 mRNA upstream 20374 11471939 ~ 12290710 (-) False LOC110513475
XM_036938060.1 mRNA upstream 93525 11545090 ~ 12290710 (-) False LOC110513475
TU130157 other downstream 86010 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 86010 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 113139 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 126093 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 220597 11210473 ~ 11218154 (-) True G113688
TU130213 other upstream 174970 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 1132462 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1159104 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1256262 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1283749 12735314 ~ 12739157 (-) True G114442

Expression Profile