RNA id: XM_021596984.2


Basic Information

Item Value
RNA id XM_021596984.2
length 2286
RNA type mRNA
GC content 0.53
exon number 18
gene id glsb
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45340329 ~ 45399501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAAGGGATTTTATTCATTTTACAACGCCAGTACATTACAGTGCTAGTCATTGCCCACGCTGAATGTTAACGTGGTACAGTGCCTATCTTTCAATTTCGGGTTTTAGGATTTTTTTCAGGCAGACATTCTTCTCAACTTGCTCGAAAGGATTGAAATGTTACAGTTTAGGTTTTCGTCAGTGCTGAAGGAGTTGTTTCAATCCAACCTAAAGCGCCCTTTGACAGGTATTACAAGAAATAAAACGTCGTTACCAATCCACTACTGCTCCAGCAACGCCTCTCTTGATGTCCAAGTCAGCTTCAAATTGAAGCTTCTCCATGCCGGTGTCCACCGCCCTTTGCTTTGCGCCGCACCTGGGACCCGGACCTACTGCACGAAGACCGAAGGTGCTGCTATACCTGTGACTGAAAGTGCTATACCGGTGACCGACCAGGAGAAGAAAGATGAGACTGCCAAAGAAGCAGCGGCGGAGAAGAGAAGGAAGGCAGGCATCCTGCCCAGTCTGGAGGACCTGCTCTTCTACACCATCGCAGAGGGCCAGGAGAAGATCCCCGTTCACAAATTTCTCACAGCACTAAAGGCCACGGGACTACGCACAGGAGATCCCCGGCTGAAGGAATGCATGGACACCCTTAAAGTCACCCTGAAGAACACCTCGGACggagtcatgctggacagagacctcTTCAAGAAATGTGTCCAGAGCAACATAGTCTTGCTCACCCAGGCCTTCCGCAAGAAGTTTGTCATCCCCGACTTCCAGTCCTTCTCTTCTCACATCGACGAGCTCTACGAGAGTGCCAAAAATCTGACCGAAGGCCAGGTTGCAGACTACATTCCCCAGCTTGCCAAATTTAGCCCAGACCTGTGGGCCGTGTCTCTGTGTACCGTGGATGGACAAAGACACACGGTAGGCGACACCAAGGTCCCCTTCTGCTTGCAGTCGTGTGTGAAGCCGCTGAAGTACGCCATCGCGGTGCACGACCACGGCACCGAGTACGTGCACCGCTTCATCGGGAAGGAGCCCAGCGGCCTGCGCTTCAACAAGCTCTTCCTGGACGAGGACGATAAGCCCCACAACCCCATGGTGAACGCCGGCGCTATTGTTTGCACCTCATTGATAAAGCAGGGAGCGAGCAATGCTGAGAAGTTTGACTATGTCATGAACTTCCTGAATAAGATGGCAGGAAATGAGTATGTAGGCTTCAGCAATGCCACATTCCAGTCGGAGCGCGAGTCAGGAGACCGGAATTTCGCTATCGGCTACTACCTGAAAGAAAAGAAGTGTTTTCCTGAGGGGACAGACATGACGTCCATTCTGGATTTCTACTTCCAGCTATGCTCCATCGAGGTGACCTGCGAGAGCGCCAGCGTCATGGCGGCCACCCTGGCAAACGGCGGCTTCTGTCCAATCACGGGCGAGCGCGTGCTGAGCCCGGAGGCAGTGCGTGACACGCTGAGCCTCATGCACTCCTGCGGCATGTACGACTTCTCTGGCCAGTTCGCCTTCCACGTGGGCTTGCCAGCCAAGTCGGGCGTGGCAGGGGGCATCCTTCTGGTGGTGCCCAACGTTATGGGCATCATGTGCTGGTCTCCTCCGCTGGACAAGCTGGGCAACAGTGTCAGAGGCATTCAGTTCTGCACGGACCTGGTGTCTCTCTTTAACTTCCACAACTACGACAACCTGAGGCACTTTGCCAAGAAGCACGATCCTCGCAGGGAGGGAGGCGACCAGAGGgtCAAGTCTGTCATCAATCTCCTGTTTGCCGCCTACACCGGAGACGTCTCGGCACTAAGGAGGTTTGCCCTCTCCTCCATGGACATGGAGCAGAGGGACTACGACTCCAGGACGGCTCTACATGTTGCAGCAGCAGAAGGACATGCAGAGGTGGTGCGCTTCCTCTTAGAGGCGTGCAAGGTGAACCCTGTTCCCAGGGATAGGTGGGACAACACTCCAATGGAGGAGGCCTTGCACTTTGGCCATCACGACGTGGTCACCATCCTCCAGGACTATCAAAACAAGTACAACCCACAAGAGGCCCCCAAGAAGAAGGTCAAGGAGACGACGGAGAACAACCTGGACGGCCTGCTGTAGTGTAGCCTTGCGAGCCAGCAGGTGGCACCACGCTGCTTTTATATCATCTCTACTATACTCGACTGCTGTTTTTGTGGTGGGATACGCTTTTTGGAGTGACTTTTTTTTTTGTCGACTTTGTATGATGTCGTATTTCTGAACTGTGTGTTTGATTGAAcgtgtgtttttttaaatatatttttttatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298957 lncRNA upstream 4966 45335127 ~ 45335366 (+) True G262875
TU298898 lncRNA upstream 85884 45254197 ~ 45254448 (+) True G262827
TU298891 lncRNA upstream 97241 45242850 ~ 45243091 (+) True G262820
TU298884 lncRNA upstream 112948 45227173 ~ 45227384 (+) True G262814
TU298877 lncRNA upstream 141730 45198350 ~ 45198602 (+) True G262807
TU298928 lncRNA downstream 1469 45400277 ~ 45488380 (+) True G262852
TU299447 lncRNA downstream 192445 45591253 ~ 45591539 (+) True G263331
TU299478 lncRNA downstream 218330 45617138 ~ 45617349 (+) True G263362
TU299488 lncRNA downstream 224190 45622998 ~ 45623306 (+) True G263372
TU299492 lncRNA downstream 225469 45624277 ~ 45624493 (+) True G263376
XM_021596975.2 mRNA upstream 47698 45279937 ~ 45292634 (+) True LOC110520018
XM_036974224.1 mRNA upstream 130741 45204139 ~ 45209591 (+) False LOC110520014
XR_005046279.1 mRNA downstream 95501 45494309 ~ 45495980 (+) True LOC118956876
NM_001124342.2 mRNA downstream 101330 45500138 ~ 45502139 (+) True LOC110520024
XM_021596990.2 mRNA downstream 110657 45509465 ~ 45539298 (+) True dars1
XM_021596994.2 mRNA downstream 151104 45549912 ~ 45561382 (+) True pnkd
XM_036974274.1 mRNA downstream 172842 45571650 ~ 45578326 (+) False LOC110520030
TU298041 other upstream 814924 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1087781 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 4888152 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 4888152 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 5672244 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 440113 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 535311 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 676676 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 785326 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1432200 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile