RNA id: XM_021597336.2


Basic Information

Item Value
RNA id XM_021597336.2
length 3926
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110520189
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53235543 ~ 53253493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCGCGCTGGCTGTCGGGATTGCTCAGGCGCTGTGGACATGTCCGCCATGTTTTTCATGGCACTGGGAGTGGATCACCCGAGAAAAATAGCTTCTAAATCCAGTTAAACTCGACCAGAAATGGCTTTTCGCATTTGATTTCGACCGAATGGTTACCAATGAATCCTACTATTGTGAAATCAACCGAGTCCCTTGTGGATTTATACCGATTTTCTTAGCGAATTCTGGCGGGATACATGTTTCGTTCGCGTTCTATGTGAGTGCGATAGGGGCAAACAATGAGTAAACTATCGTTCCGAGCGCGAGCGCTAGACGCCGCCAAACCTCTCCCCATATACCGCAACAAAGACCTTCCAGACCTAAATGACTGCGTTTCGATCAACCGGGCTGTGCCGCAGATGCCTACGGGGATGGAAAAAGAAGAAGAATCGgaGCACCATCTCCAGAGGGCCATCTCTGCTCAGTCGGTTTTCAGGGAAAAGAAGGAGAACATGGTCATCCCGGTGCCGGAGGCGGAGAGCAACATCACTTACTACGACCGTCTCTATAAAGGAGAGCTCAGGATCCCCAAACAGCTCTTCCACATCCAGCCCCTGGGTCTGGATAATGAGCAGCCAGACTATGACATGGACTCAGAGGATGAGACTCTCCTCAACAGGCTCAACCGCAAGATGGAGATCAAACCCATACAGTTTGAGACCATGGTAGACAGGTTGGAGAAAGCCAGCACAAACCAGCTGGTCACTATCACAGAGGCCAAACTGCTACTGAACGAGGATGACTACCTCCTGAAGTCAGTGTACGACTACtgggtgaggaagaggaagaactGCCAAGGCCCGTCACTCATCCCCCTCATCAAGCAGGAGAAGAGAGACGGCTCCACCAATAACGACGCCTATGTGGCCTTCAGACGGCGCACAGAGAAGATGCAGACCAGGAAGAACCGTAAGAATGACGAGGCGTCCTATGAAAAGATGCTGAAGCTCCGGAGGGAGTTCAGCCGCACGGTCACCATCCTGGAGATGataaagaggagggagaagagcaagagagagctgCTGCACCTCACACTGGAGGTGGTGGAGAAAAGATATCAGATGGGTGACTTTACGGGTGAAGTCCTCAGTGAGGTGACGGCCCCTCTGGCTGAGAAGCCCGTCTACACTGCTCCAATCACTCTAACGAACGGGAACCGCCATAACCATAAAGCTGAGATCAAGACGCACAAGTCTGGTAGTCTCCAGCACCATGGGCACCACCACGTCTCGGTGAAGGACGAGGATCCCTTTGACTTTGTCAGACCAAAGAAGAAGTACGCCAGGCGGGACCCCCTGTGCCGCCCTGGCAGGCCCACCAAGCGCCAGCACATCGTTAACAAGGCTGATATTAAACAGTATGACTTCCACagctctggagaggaggaggaggactacccactgTCTCCACCATCAGAACCAGATGAGGAGAATGATCCAGATGGTGCATTTGCCTTCAGAAGGAAAGCAGGCTGTCATTACCTTGCTCCCATTGTGGACCAGAGCTCTGGCCTTCTGTGGGATCACCCTGAGCTAGCAGGGCTGGATGCCCTGCGCCACCGTCACTCCCTTACTGCCCTCTCTGTACCCCAACGCTGTGTGGGACTGGCACGCAGGAGGGTGGGGCGAGGTGGCAGGATCCTGTTGGATCGGGCTTCATCAGACCTGGACATCGCATTAAAGCAGCTGGACTCAGCCGTCGCCACATCCTCCCCCTTCACCAGGCCTTGTGCTCCAGACCTTACTGATCCCTGGCCCTCCTCACAGAACCACAGAACTATGCCTGGCTCTGCCTCGTCACTGGCAGACATTGTGAGCAACATCCAGGCTCTGAGGTGGCGCTGTTTCAGACCTAGGCCCACCCAGGGTGACGGCAGTGGTGACACGAGGACGGGCAGATCTTCCATGGATACCACGTTGTCTGGAGGGCTGTTGGTTCACTCCAAGAGAAGTGGCAAAGGAGGCATCACAGAGGAGCAGTACCAGGTCCATCAGCAGGCTCTGGCCCAGATGCAGAAACAGCAGCTGAAAGCTGCTCCTCCCCAGCAGCATTCCTCACTGTCAGAGCGACaaaacacacaaACTTCTGGCTCCACTGATTGCATCATATCGAAGACTCTGGACTCAGCTAGCGCCCATTTTGCGGCATCAGCTGTCATCAGTGCATCAGGCCAGGTCAACAATGAGAACAAATCACACAATACCAGCGTCAATGGGGTCGTCCAGACTTTGGGGACCTCCAGACCTCTTCACTCCACCAGCACATCCCAGAGCGGCACAGGGTTGGACAGGTCAGGTCTTACCTCCTCCAGCGGAGGCCCTCTGCTACCTGCCCACTCCACCACCTCCTCGCCTCAGTCTCTGCCCAACCACCGAGGCCACGGCAGTGCTGTCTCCCCTGCCCATCACCACCACAACGCCAGACCCTCTGCCCCCTCGCCGTCTGCCTTAAAGCTGGCCACCGTGGCTGCCAGCAGCCTGGACCGTGTGGCCATGGTGACGCCCGCCTCTGCCATCGGCAGCATGGCCAGGCATATGTATCTGCATAATGAATTACTATAGTTATTCATTTTTGTAGGGATACTCACGAACCTGAGAGACATACTTTGAACGGCATATCAGAGACCACAGTACCAATGGAGGTGACAtaaccccctcccttcctcctccctcatcgCCATTCTGCTCAGACCGGTGAATGTGACAAACAGAACGCAAGCTCCAGCCCCAGCCACCAGAGGGCACGCGTATACAAGGACCTATACAGAATCGAGCATATCAAAAAAATTATAACGTGTCAATAttataaatgtacattttgtaaaTTGGGAATATCACTACCTTGTAAGATAGTATATTTGTATCATTagtatgttttctttttttctgttaCGTGAATTCTAGTAAATTTGACATCATGCTTTTGCACTTGAAAAATGCAAACAATATATAGTACATGTAAAAATGCAAAAAATGTTTGTTGGGATCATGAGCATGAACCACGGATCCTGTATCACTCATTTTACCACTATTTATGTTGCaatgtttacatttttgtatCTCTACAGACGAAACAAATCAGCAAAATATGGACATCGGTCTTGCTAGTATATTTGGTTCTTGTGCTTTTTTTCTAAAGATGGGAAATGAGCCTGATTTTGATTTGGTTTCACAAATTGAATAGTTATGGTCTTTTGTAAGTAGATTAGCAGTGGCATTTTTTTCCCCTTCAGACAAGTATTTTCTGTTACTTTGTCAGTTGTAACAGGAATTGATTgtctttttaattttttattctgttttcttttcctttttcatTCAATGCCGAATTTTCCAAAACAATGAAGAAATCTTAAAAATGAGCCATTCTCCATACAAACctatttatttacatttaaatCCAAATGACAAATAAATGCATCCTAAAATCAATCTGCAGATGTAAAGCAAGAATTTTTAATAATATATTTGCCTTTTTTAAACGGGTAGGGAGTTTAAGCCAATGAACAGTACACAGGAATATTACCATTCTATCTGTTATGTATTGCGCTGTATAATCTTGCACATTACTTGGCAACTCTTTGAACGACTACCCCTTTGGATTGGGGGGTGCACATCAATATTTTGgggtattttttttcttctttggtCAAGGGGCAAGTAACATGTTGAAACAATGTCTGATGGTCAGTGATTGACCTCCCCTGTAGATTATGTAGTTGATGTAGTGATGTCCTGTAGAGATATTAGAAACATGTTTAGATAATTAGTAATGCCTAGTGTTCATGCACTATTTCTTCAGACATACATTTTTCCCTGTTACTTGTTCTTGGAGTGTTTCAGAAGGAAATGCTGGGAAATAAATATATCTATACATATCAGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309216 lncRNA upstream 18515 53216713 ~ 53217028 (+) True G272308
TU309196 lncRNA upstream 49766 53185564 ~ 53185777 (+) True G272290
TU309184 lncRNA upstream 62372 53172836 ~ 53173171 (+) True G272283
TU309159 lncRNA upstream 116048 53119173 ~ 53119495 (+) True G272258
TU309158 lncRNA upstream 117178 53117965 ~ 53118365 (+) True G272257
TU309243 lncRNA downstream 83662 53337155 ~ 53337586 (+) True LOC110520190
TU309736 lncRNA downstream 94192 53347685 ~ 53367731 (+) False LOC110520191
TU309755 lncRNA downstream 116676 53370169 ~ 53370382 (+) False LOC110520191
TU309735 lncRNA downstream 120707 53374200 ~ 53375516 (+) True LOC110520191
TU309780 lncRNA downstream 125917 53379410 ~ 53379650 (+) True G272837
XM_021597332.2 mRNA upstream 516 53174264 ~ 53235027 (+) False LOC110520187
XM_021597333.2 mRNA upstream 516 53174264 ~ 53235027 (+) False LOC110520187
XM_021597330.2 mRNA upstream 2288 53174264 ~ 53233255 (+) False LOC110520187
XM_036974574.1 mRNA downstream 1923 53255416 ~ 53288980 (+) True kif5c
XM_021597339.2 mRNA downstream 37791 53291284 ~ 53339392 (+) False LOC110520190
XM_036974575.1 mRNA downstream 65802 53319295 ~ 53339391 (+) False LOC110520190
XM_021597340.2 mRNA downstream 94163 53347656 ~ 53375674 (+) False LOC110520191
XM_021597341.2 mRNA downstream 116491 53369984 ~ 53375674 (+) False LOC110520191
TU309190 other upstream 12278 53221427 ~ 53223265 (+) True LOC110520187
TU308945 other upstream 63115 53166952 ~ 53172428 (+) True acvr2aa
TU307177 other upstream 1656860 51573980 ~ 51578683 (+) False LOC110520169
TU305958 other upstream 2335266 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 2630727 50602302 ~ 50604816 (+) True LOC110520146
TU309244 other downstream 37837 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 395332 53648825 ~ 53652431 (+) False G272965
TU309923 other downstream 395332 53648825 ~ 53652152 (+) True G272965
TU309978 other downstream 403968 53657461 ~ 53658683 (+) True G273004
TU310076 other downstream 587771 53841264 ~ 53841617 (+) True G273094

Expression Profile