RNA id: TU255423



Basic Information


Item Value
RNA id TU255423
length 241
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G223504
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10468853 ~ 10469093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTGCATCCTCCCCAgccctgctcctcctcctacagCCACTATGGGTAGTCCAGTCTGGGCAGAGACAAACTCTAACATGGGGGCCAGGGGTCCCCAGGCGGTGGGTGGTGGCCTCTCCTCCTCGTAGACCAGGCCCTGTAGGGGCCTCGCTGCCAGCAGGTCACACAGTTGGGACAGCAGAGTCTTAGGACTACTGTCATTCACCTGAAGAGGAAGTCATGACAGGGATAGGTTAGCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU255395 lncRNA downstream 53798 10414679 ~ 10415055 (-) True G223477
TU255389 lncRNA downstream 71727 10396551 ~ 10397126 (-) False pitpnc1b
TU255390 lncRNA downstream 71727 10396670 ~ 10397126 (-) True pitpnc1b
TU254997 lncRNA downstream 74052 10394478 ~ 10394801 (-) True G223230
TU254994 lncRNA downstream 76541 10392100 ~ 10392312 (-) True G223227
TU255428 lncRNA upstream 5034 10474127 ~ 10499047 (-) False G223508
TU255427 lncRNA upstream 5734 10474827 ~ 10499047 (-) True G223508
TU255438 lncRNA upstream 12402 10481495 ~ 10482430 (-) True G223515
TU255435 lncRNA upstream 19162 10488255 ~ 10489191 (-) True G223514
TU255442 lncRNA upstream 20888 10489981 ~ 10492559 (-) True G223519
XM_036968571.1 mRNA downstream 55781 10397064 ~ 10413072 (-) False pitpnc1b
XM_036968575.1 mRNA downstream 58361 10397064 ~ 10410492 (-) False pitpnc1b
XM_036968546.1 mRNA downstream 58364 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968556.1 mRNA downstream 58366 10397064 ~ 10410487 (-) False pitpnc1b
XM_021589877.2 mRNA upstream 362473 10831566 ~ 10847242 (-) True LOC110508947
XM_036968611.1 mRNA upstream 384609 10853702 ~ 10865260 (-) False LOC110508966
XM_036968606.1 mRNA upstream 384609 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA upstream 384609 10853702 ~ 10865261 (-) False LOC110508966
XM_036968608.1 mRNA upstream 384609 10853702 ~ 10865262 (-) True LOC110508966
TU254793 other downstream 445650 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 445668 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 453961 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 465959 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 785482 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 601853 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 703027 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 806824 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1258269 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1283758 11752851 ~ 11753680 (-) False G224869

Expression Profile