RNA id: TU302952


Basic Information

Item Value
RNA id TU302952
length 202
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G266598
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48288741 ~ 48288942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCAACGTTTTGGGAACAATGTGTCTAGTGTTTTGAGAACAGACTATCTGTCTGAGCCAGATCCGGGGAGACCTTGGCTGGGACACTGAGAACTTCCCAGTCCCAGGTCTCTCCCTATCTTAGGGGAGGGTAGGAAGACACTATTCTCACGTACTCCCCTAGGCTCTATTGGCGGGCGGATTTGATGGTtggtgtggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302943 lncRNA upstream 5232 48282871 ~ 48283509 (+) True G266589
TU302939 lncRNA upstream 8378 48280153 ~ 48280363 (+) True G266585
TU302938 lncRNA upstream 9456 48279063 ~ 48279285 (+) True G266584
TU302934 lncRNA upstream 12422 48276103 ~ 48276319 (+) True G266580
TU302870 lncRNA upstream 47314 48241192 ~ 48241427 (+) True G266525
TU302993 lncRNA downstream 25853 48314795 ~ 48315004 (+) True G266639
TU303040 lncRNA downstream 64470 48353412 ~ 48355531 (+) True G266682
TU303050 lncRNA downstream 79608 48368550 ~ 48368951 (+) True G266690
TU303060 lncRNA downstream 87272 48376214 ~ 48393522 (+) True G266699
TU303191 lncRNA downstream 254057 48542999 ~ 48543972 (+) False LOC110504158
XR_005047278.1 mRNA upstream 259044 48028238 ~ 48029697 (+) True LOC118958193
XR_005047257.1 mRNA upstream 261656 47981052 ~ 48027085 (+) False LOC110520067
XM_036974343.1 mRNA upstream 261657 47986310 ~ 48027084 (+) True LOC110520067
XM_036974342.1 mRNA upstream 261658 47981053 ~ 48027083 (+) False LOC110520067
XM_021597077.2 mRNA upstream 311903 47971973 ~ 47976838 (+) True LOC110520066
XM_036974349.1 mRNA downstream 166268 48455210 ~ 48508839 (+) False LOC110520075
XM_036974350.1 mRNA downstream 166268 48455210 ~ 48508839 (+) False LOC110520075
XM_036974351.1 mRNA downstream 166268 48455210 ~ 48508839 (+) False LOC110520075
XM_036974352.1 mRNA downstream 166268 48455210 ~ 48508839 (+) False LOC110520075
XM_036974353.1 mRNA downstream 166268 48455210 ~ 48508839 (+) False LOC110520075
TU300304 other upstream 1456497 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 1456537 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 1456607 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 2103937 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 2209316 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 1221861 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 1265556 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 1547675 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 1873359 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 2313360 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile