RNA id: TCONS_00030363


Basic Information

Item Value
RNA id TCONS_00030363
length 3804
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_015072
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 48237650 ~ 48241837 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCACCTGGTGTTAAACAGTCAGAAGCTGTTTGATCAGCCAAATCATCAGTCTCTTCCTTTCTCTCTGTATCTGATGTGCTTTCACTGATCTGATTCCAAAGAGAGATTGTATCTCCGTCCGCCTTTACCTCCTCCTGTTTACTGTCATTGGAGTGTGTGAAGGTCTGCTTTGTACTATAAGCACCGGAGAGCTCCTCAATGCTGCAATCTTGACTTTCACTACCTAGTGTTCTTGATAGTGTGTCTATATAGCCACCATGTGTGTTCTTATCAGTGCTCGAGTGGTGTTTGCACCCTGCCGTGTCCTCCAGGATTGTTATCTCTGTGTTATACTGGTGCAAACCCAATGGGAGTGGCAGATTCTCCAGGTGACTTTGTGATTGCATGCTTGAATCTGTAAGTGACACCTTGAGCAGCTCTGAGAAGGGAGGGGCTGGAGTGCATTCTTCAGGCACATGTTCTTGATGGACTGGTATTGCTGGTTTCGGTGTGGAAAGACTGGGAATCTGAGGCTCTGCTTGACCTGTCAACACTCCAGCTCCTCTGCATGCCTCTGTTTCCACTGCGGATGAGATTTGGTCCATGTGCGATTCATTGCTCATCTTTTTGAGCATTGGAGAATCTTCTGAAGCCTTGTGAAGTTTTGTGGCTTCGATGATTTGGTTTAATTCGTTGTCTAGAATGGATATTGCATCATTTCTAGTTGTCGTCCTCTCTGCATtggatttattttgatttatttgatcaATAGATTCCAATCTTTGAGTTGATGCATCTTGAGCATATTCCTCTCGGTCTTCATATGCTCTGGATGTTTTCAGTTGCTCGGTCCCCATGTGCAATTCATCAGTCTTCTTTTCGACCATTGCAACCTTTTCCAAAGCCTTGTGAGGTTTCGTGGCTTCCGTGATTTCTGCATTGGATTCATTCTGATCAACAGACTTCTCAATAAATCTTTGAGTTGATGCATCTTGAAGACATGCTTCTCGGTCTTCATATGTTCTGGATGTTTTCTGTTGTTTCTCAGTCTCTTCATGCAAATCATCCCTCTGCTTTTCGACCATTGCAAACTTTTCCAAAGCCTTGTGAAGTTTTGTGGATACTTTGATTTCTGCGTTGGATTTATCTTGATCAACAGACTTCTCAATAAATCTATGAGCTGATATATCTTTAAGATGCTCCTCATGGTCTTTATATGCTCTGAATGTTTTCTGTTGTTTCTCAGTTTCCATGAGCACGTCATCTTCCTTCTTTTTAACCATTGCAAATTCTTCCGAAACCTTCTGAAGTTTTGTGTCTTCAGTGACGGATGTTGCATCATCTGTAGTGGTCATCCTTTCCGCATTGGTTTCACTCTCACCAATAGACTTCTCAGTAAATCTTTGAGTTGATGCATCTTGGAGATATCCCTCTTGATCTTCATATGCTCTGAATGTTTTCTGTTGTTTCTCCATCTTAGTGTATAATTCATCTCTCTTCTCTTCGACCATTGCAACCTTTTCCAAAGCCTTATGAAGTGTTGTGGCTTCCGTTATTTCTGCATTGGATTTATTCTGATTTATTCGATCAACAGGATCCAAACTTTGAGTTGATGCATGTTGAGGATATTCCTCTTGATCTTCACATGCTCTGAATGTTTTCTGTTGTTTCTCAGTTTCTATGAGCACGTCATCTTCCTTCTTTTTAAGCATTCCACATTCTTCCGAAACCTTCTGAAGTTTTGTGTCTTCAGTGATGGATGCATCTTGAAGACATTTCTCTTGATCTTCACATGCTCTGGATGTTTTCTGTTGTTTCTCAGTCTTTGCCTTTAAGGACTGAGAGCTGAACATCTGGTCTGAAACATCTAAATGAAGGGGAGGATAAGATGTCAAAGACATGCTAGGGATGGTATGGTTTGGAAAACCTGAGGATGCTTTTGCAGAGCTGTCAGTATCAGTTTGGTTATTGTCCTGACCCTCATGGTCTAATATTTCGGTCAGGGTTTCCACATCTGAATCAGGCTCATTGTTAGAGAGAGATCTGTGGGAATGGTCAAAGCTGATGTGGTCTGAGGGACCTGAAAGGTCAAAGGTGACTACTTTGGTTGACTTAATGATAGTGTATGCTCGAGCTGATGGAGATAAAGGTATATTCGACTCATTCTCAGGAAGGACAGGTTGAGCAGGGTTGTGTTTCTCTGAGTCAGTGGCATATGCTAAAGAAGAATAATTATCTGTTGCATGAGATTCCTTTGAAATGGTCACACAACTACTCTCAGGGGGAGTTTCTTCTCGTGAACCTGAATCAGCTGTGGAATGTACAGTAACATCACTTTCAGAAACATTGGTATTGGAGGAAGATGGTTTTCTATCAGTTTTTATTCGGTTTCCTTTTATTCTGGAGGAGCACAGAGTGCTGGACACAATCACATATGGCTTTGAGGACACATGGTCTGATTCACAGATGTCTGTAGTGGGACTGGATGGGTCAGAGTTGATTACATTACTGTCAATGAAAGACTTGTTTCTGACATTTGCAGAGGTGGTATGAGAATCTTCATATGATATGGTGTCAGCTGGATGACTGAAGGAGTCTTCAGGAAGGTTAAAAGCAGAATTTGTGTTTGTGCTGAAACTCTGGGTCATGGTACTGTCTGAGTTGAAACTATCATGCATGGTAGAGGTGGAACTTTGAGGGATGTAAGAAGAGGAACTTTCATGGACTAATGGAGTGGAACTATGGGGAACAGAATTGGTGGAACTCTGAGGGATGGAAGAGATGGATATTTGGGGAACAGAAGAGGAGGAACCCTGAGGGATGGAAGAGGTGGATATTTGAGGAACAGAAGTGGGGGAACTCTGAGGGATGGAAGAGGTGGAAATTTGAGGAACAGAAGTGGGGGAACTCTGATGAATGGAAGAGGTGGAAATTTGGGGAACAGAAGTGGAGGTACTCTGTGGGATGGATGAGGTGGATATTTGGGGACCAGAAGAGAAGGAACTCTCAGGAATTGAAGAGGTGGACAATTGTGGATCAGAAGAGGAGGAAACCTGAGGGATGGAAGCAGTGGGATTTTGGGGATCAGAAGAGAATGAACTCTCAGGGATGGAAAAGACAGGACTTTTGGGTATGAACAAAGAGGAACTCTCATGAATGGAAGAGTCTGTGCTCTCAGGTCTGGAGATGTAACTCTCCTGTGTAAGAGATGCTGCATTACTGTATTCTCCGTGTTCCAGGTGTGACCTTTTCTGAGAAACAACATTGTCATGTGAAATACGGGCTGTAGATGTATCAGTACATGCTGCAGTTTTCATATCAGTACCAGGACAGATGTAATACTCTGAAGTCTCAGAAGTGATGGAATTCTGAGCAGATAGTTTTCCATATTGGGTATCGGGTTGAGCTTGGGCATCAGATGAGATGTTTGGGCTATCAGGGGGGGTTTGGTAAGCATCACTATCAGAAGAGTCGATGTATGGTATTGCTTTACTCTCCTGAGCTGTAGGCATGAACCCTGCATCTTCTTCACTGAGTGTAGACTGGTCGCTCAGCACATGCTGGGACTGGGATTGGTCAGAAGCACAGGGAGGTTCTGGTGCAGACCTCACTGCCTCAACACAAGCCTGGATTTGTTCTGTTTCTTTATGGTTGTCAAATTCTTCCTGTTCACTGATGTGATCTTTCACTCCTGAAATGTCACTATTGCTGGTAAGATCCTGAACCCGATCTCTGTTTTGCTTCTTCTTCCTCCCCCAGGTCAGGGATCCAATAAAGCCCTTGGGTTTATGAAGGTCTGTCTCAGAGTAGCTCCGCTTCCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030355 lncRNA downstream 51493 48185298 ~ 48186157 (-) True XLOC_015071
TCONS_00030354 lncRNA downstream 213579 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00030353 lncRNA downstream 304716 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00029800 lncRNA downstream 459013 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030352 lncRNA downstream 476159 47760897 ~ 47761491 (-) True XLOC_015063
TCONS_00029672 lncRNA upstream 58745 48300582 ~ 48305427 (-) True XLOC_015073
TCONS_00030364 lncRNA upstream 86711 48328548 ~ 48330301 (-) False XLOC_015075
TCONS_00030365 lncRNA upstream 92251 48334088 ~ 48336533 (-) False XLOC_015076
TCONS_00029676 lncRNA upstream 97509 48339346 ~ 48340822 (-) False XLOC_015077
TCONS_00029677 lncRNA upstream 97509 48339346 ~ 48349001 (-) True XLOC_015077
TCONS_00029669 mRNA downstream 198144 48037798 ~ 48039506 (-) False XLOC_015070
TCONS_00029670 mRNA downstream 198250 48037939 ~ 48039400 (-) True XLOC_015070
TCONS_00029668 mRNA downstream 218284 48017892 ~ 48019366 (-) True XLOC_015069
TCONS_00029666 mRNA downstream 221722 48003691 ~ 48015928 (-) False XLOC_015068
TCONS_00029667 mRNA downstream 227160 48004954 ~ 48010490 (-) True XLOC_015068
TCONS_00029671 mRNA upstream 58456 48300293 ~ 48306765 (-) False XLOC_015073
TCONS_00029673 mRNA upstream 66913 48308750 ~ 48312109 (-) True XLOC_015074
TCONS_00029674 mRNA upstream 87061 48328898 ~ 48330287 (-) True XLOC_015075
TCONS_00029675 mRNA upstream 92736 48334573 ~ 48336535 (-) True XLOC_015076
TCONS_00029678 mRNA upstream 122475 48364312 ~ 48371092 (-) True XLOC_015078
TCONS_00029659 other downstream 669802 47567713 ~ 47567848 (-) True XLOC_015061
TCONS_00029643 other downstream 821245 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 837343 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 2214771 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 2277467 45955079 ~ 45960183 (-) True XLOC_015039

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU452294 True 3041 lncRNA 0.45 2 CI01000223 69374 ~ 73278 (+)