RNA id: TCONS_00030766


Basic Information

Item Value
RNA id TCONS_00030766
length 541
RNA type mRNA
GC content 0.53
exon number 5
gene id XLOC_015368
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 20472150 ~ 20526830 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTACAGGCAGCGAACTGATTGACAATGTGTTTGTAAACCGGCTGGGAATAACCAGTCTCATAAGAGAGGCGATGAGTGCAGGAGACAGTCATGAGGAGGGCAGGCTGGTCTATCGGTATGGAGGAGAACCAGTGGGAGCTTTTCTTCAGCCCAGTCTCAGGCCTCTGGTGCCCAGCATTGCCCACGCAATGTTTCTGGACGTCACACATGACAACGAGTGCCCCATTCAGatcCGCTCTGTGTATGATTCGCTGCCCAGCTCTGCTATTGTTTCCATGGCCTGCTGTGCCACTGGCAGCACCAGAGGATATGATGAGTTGGTGCCACACCAGATCTCAGTGGTATCTGAGGAGCGTTTCTATACCAAGTGGAGTTCTCAAGCCAAGCCCTCGTCTCCTAATGAGGTCAACCTGCAGACAGGAATCATTGCTGGAAAGCTGGCTCTCAATCGGCTACACCAGGAGCTGGCAGCTAAAGGCTTCAGCCAGGTGTTTGTGGACCAGGTGGATGAGGACATTGTTGCAGTGACTCGTCATTGT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0017144 drug metabolic process biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0032501 multicellular organismal process biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0008201 heparin binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:1901681 sulfur compound binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-071004-6 Predicted to enable 4-alpha-glucanotransferase activity and amylo-alpha-1,6-glucosidase activity. Predicted to be involved in glycogen catabolic process. Predicted to act upstream of or within glycogen biosynthetic process. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease III. Orthologous to human AGL (amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase).

Ensembl:

ensembl_id ENSDART00000157931

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033254 lncRNA upstream 22907 20472150 ~ 20473316 (+) False XLOC_015368
TCONS_00033515 lncRNA upstream 816894 19659710 ~ 19679329 (+) True XLOC_015363
TCONS_00033514 lncRNA upstream 846882 19640952 ~ 19649341 (+) False XLOC_015362
TCONS_00033253 lncRNA upstream 879434 19614953 ~ 19616789 (+) True XLOC_015359
TCONS_00033513 lncRNA upstream 901029 19590044 ~ 19595194 (+) True XLOC_015358
TCONS_00033516 lncRNA downstream 222018 20725713 ~ 20776841 (+) True XLOC_015372
TCONS_00030787 lncRNA downstream 586622 21090317 ~ 21124019 (+) False XLOC_015379
TCONS_00030792 lncRNA downstream 671366 21175061 ~ 21177376 (+) False XLOC_015380
TCONS_00030794 lncRNA downstream 674350 21178045 ~ 21180098 (+) True XLOC_015380
TCONS_00030796 lncRNA downstream 682230 21185925 ~ 21186788 (+) False XLOC_015381
TCONS_00030764 mRNA upstream 52965 20430366 ~ 20443258 (+) True XLOC_015367
TCONS_00030761 mRNA upstream 68083 20406399 ~ 20428140 (+) False XLOC_015366
TCONS_00030763 mRNA upstream 68083 20410652 ~ 20428140 (+) True XLOC_015366
TCONS_00030762 mRNA upstream 74200 20406539 ~ 20422023 (+) False XLOC_015366
TCONS_00030760 mRNA upstream 124943 20332044 ~ 20371280 (+) True XLOC_015365
TCONS_00030767 mRNA downstream 35707 20539402 ~ 20555743 (+) True XLOC_015369
TCONS_00030768 mRNA downstream 101080 20604775 ~ 20615634 (+) False XLOC_015370
TCONS_00030769 mRNA downstream 101491 20605186 ~ 20614700 (+) False XLOC_015370
TCONS_00030770 mRNA downstream 102230 20605925 ~ 20615639 (+) True XLOC_015370
TCONS_00030774 mRNA downstream 290287 20793982 ~ 20812059 (+) False XLOC_015373
TCONS_00030758 other upstream 702442 19790685 ~ 19793781 (+) True XLOC_015364
TCONS_00030756 other upstream 702453 19784959 ~ 19793770 (+) False XLOC_015364
TCONS_00030754 other upstream 846882 19640952 ~ 19649341 (+) True XLOC_015362
TCONS_00030752 other upstream 867429 19628697 ~ 19628794 (+) True XLOC_015360
TCONS_00030749 other upstream 921067 19575059 ~ 19575156 (+) True XLOC_015356
TCONS_00030771 other downstream 128526 20632221 ~ 20633527 (+) True XLOC_015371
TCONS_00030772 other downstream 221989 20725684 ~ 20776841 (+) False XLOC_015372
TCONS_00030773 other downstream 222018 20725713 ~ 20725811 (+) False XLOC_015372
TCONS_00030786 other downstream 564039 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030793 other downstream 672255 21175950 ~ 21177665 (+) False XLOC_015380

Expression Profile

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