RNA id: TCONS_00030835


Basic Information

Item Value
RNA id TCONS_00030835
length 3013
RNA type mRNA
GC content 0.50
exon number 10
gene id XLOC_015403
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22765492 ~ 22792460 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTTCTACATAAAGCCATTCAGGCCGCTCGAGAGGGGGATGTGGAGGCTCTGAGGGCCCTGCATGTGTCTGGATGCCTCAGTCCAACTATCACTGATGCCCAAGGAGCCTCACCTGTACATCATGCTGCCCGAAATGGACAACTGGACTGCTTGGAGTTTCTGGTACATGAAGGTTATTTCCAATGCAACACCCGAACGAAGAACGGAGCAACAGCTGCCCATGATGCTGCTGCCACCGGGCATATCCGAGAGCTGCAGTGGCTGCTGAAACAGGAGACGTGTGGGATTGAGGATCGTGATGGCGAGGGGGCGACTGCTCTGCATCTGGCTGCCAGGTTTGGCCATGCGGAGGCAGTGCAGTGGCTGCTGTTTGAAGGTGGTAACACAGAGGCAGAGACCGACTGCGGAGCTCGACCTGTACATTACGCTGCAGCCAGCGGAGACCTCACTTCCCTCAAAATGCTCATGTCCAGCTCTCCACGGTGTGTGGACTGTCAGACAGGAACCGGAGCCACTCCACTGTATTTGGCCTGTCAGGAGGGGCATCTGCATGTGGTCGAATACCTGGTGAAAGACTGTGGTGCCAACGTCCATGTTCAGGCCAAAGATGGCATGAGTGTGTTACATGCGGCTGCCCACATGGGACACTACGCACTGGTGGTCTGGCTGGCCTCGTTCACAGACCTGGATCTGTCCTGTCAGGATAAGAATGGAGCCACAGCACTACACTTTGCTGCTAGCGAGGGCCACCATCGCATCGTTGAGCGTCTTTTACTGATGGGGGTAAAGGTTTTGAAGGACCACTGGGGCGGGACGCCTCTGCATGATGCAGCAGAAAATGGAGAGCTGGAGTGCTGTCGAGTGCTGCTGAATAATCACATCAGTCCGCTGGAGAGAGACTCTGACGGGTTTACTGCACTCCACCTGGCAGAATACAATGGCTATCATGACTGTGCCAACTTCCTGCGTGATGCTGGAGCTCAACAGTCTCCAGACATTGTTCTTATAGAGGAAGAAAGGACCTTGTTTAGCACAGCCGACCCCTACCAGGACATTGAGGACTTGAAACATAAAAGCAAGATGGAAATCTGCAAGCCGGTGAATGAAGTTTCCCCTCAGCCTCGTCCTTCTCCAGCATGTCTGGAAACTTCATCTACATTATTGGATTCATCGCAGGCTAAGAAAGCTGGAGCTGGAACCATTCAGCACATGCAAGTGGCCTCTACAGTTGTAACTTCATTCAACATGAGGAAGCACCTTGAGGAAGAAGAGGCCATGTTATCTCATAAGTCCATGAGGTCCATGAGACAAGCAGGAATCACAGCGGTCTTCACTGGACAAACAAATGTACAGAAGGGAGAGAACGACATTGGTCCACTTGTGACACTGGAGGCAAATCTTGCTGACATTGATTCTCTGATCCCGACTCATGATGAGAACGGCAGGCCCATTGCTGAATGGAAGAGGCAAGTTATGGTGCGCAAGCTTCAGGCTCGACTTCAGGATGAAGATGACCACAGCAAAAAAGTAAACCACGGCAAACACATTGAGGTGGATGGCTGGAGGTATTCCCAAGTCCACAATGTCATTTTGGGCCCCTTTGGAGAGCTGCTCACTGAGGATGACCTGGTCTACTTGGAGGGACAGATTGAAACAATCTCCCTTCAAAAGCGATGCCAGGCCTATGAACTAGAGCTTGCCCGGCTGGCTGAAGAGCTCAGGGCCATCCTTCCTGCTCCCATCGTGAATATCACTGTCAACACCCAGTGCCCCCAGCTCCCAAACATGGAGGAATCTCTGCCTCTTCCTGTGTGGTACAACCGTATCTCAAATATAGTAAAGAGCATGTCTTTGCTTCTGACAAATCTCTCAGAAACAAGCGGTGAGGATGGGATCTGTAAGATGCCAAACAAAGATCTGGCTTCGGTTTTTACATACCAGCCGGAGAGGCAAAGTTCAATCCGAGGACGAAGGCAGAAAGTGGAACTGGAGATCCAGCAGTCAGGAGTTTCTGTCAGAAACCTGAGGTCCAACTTTGAGAGTCAAATAGGAAACATCTACCCATTTTCCGGGCTTTTAAACAACACATGCGACACAAGGCAGCAAAAGCTGTCTACATCGACAAATGGATGTGAGCAGCCCATGGGGACAATCCAGAGCACCGACATAAATCACCTTCATGACAGTGCCATAAAATGCCAACAGGCACCAAGCAGAGATGCAGCAAAAGTGATGGAGACCACCTGCTTGCGGAAGGAGCGTATCGTTGTCTTGTTTTTGAGCCACTGGAAAAGGTCTGCATATGCAATATCACTGCGGGCCAAGATGAAACAGGAGCTTGGCACTCTTACAGGAGAAGGAATAACAGCTCCAGTCTCAAAGCCAGGAACAAGATCACTGTATCATCTCTATAGGCAAAGAACTGCAATAGATAAGATGATTGGCAACTGGAAACGGGTCACCTCAGGCGTCCCATCACGACAGATCCGGAGTCTCCAGAGAAAGCGAGTCACCTATTCGCCCGAGCAGTTCCTTCCTCGAGTGGATGGTGCTCCGGTTGCTTACGACAGCCTGACTCTTGACCTGTTCATGCTTGGTTATTTTCACATTCTCGAACAGGACCTCACAGCTGAGGAGCGCAAGATGAGACACCTGCTGTGCTTTGAGGTGTTTGACCACGTTGGGAATTTTCCCTGGGAGAGGGTCCGAGACTTCCATCGGGCCGTCCTCAGGGACATTGAGGCTGGGAGACGTGAGTGGAAAGATGGTTTTGAGGACATCAAAACACAATATTTTGGGAAAAAAGAAAGTGGGATTTCTAAAGAGCCTGTGAATGATTCCCATGCAGTACCACAAGTGATTATTGAGAATGTCACACCAAACGATGAAGGACATCTCAATGGAGACGGAAGCAATGATTTCTCAATGTTTAACAATGATGAAATTTGCAAATACATTGACCGAAGTTTCACCTTCTGGAAGGAGAAAGAAGCAGAGTTGTTTAATTTTT

Function

GO:

id name namespace
GO:0051017 actin filament bundle assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-481 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly. Predicted to be active in cytoplasm. Orthologous to human ESPNL (espin like).

Ensembl:

ensembl_id ENSDART00000133222

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033518 lncRNA upstream 95632 22659848 ~ 22669860 (+) False XLOC_015401
TCONS_00030831 lncRNA upstream 95632 22659848 ~ 22669860 (+) False XLOC_015401
TCONS_00030825 lncRNA upstream 217498 22547392 ~ 22547994 (+) True XLOC_015398
TCONS_00033261 lncRNA upstream 374861 22364007 ~ 22390631 (+) True XLOC_015394
TCONS_00030813 lncRNA upstream 794083 21882881 ~ 21971409 (+) True XLOC_015392
TCONS_00030837 lncRNA downstream 3097 22795557 ~ 22799328 (+) True XLOC_015404
TCONS_00033519 lncRNA downstream 118732 22911192 ~ 22916384 (+) False XLOC_015407
TCONS_00033520 lncRNA downstream 118879 22911339 ~ 22916384 (+) True XLOC_015407
TCONS_00033521 lncRNA downstream 192670 22985130 ~ 22992029 (+) False XLOC_015408
TCONS_00030842 lncRNA downstream 214332 23006792 ~ 23014044 (+) False XLOC_015409
TCONS_00030833 mRNA upstream 6902 22694382 ~ 22758590 (+) False XLOC_015402
TCONS_00030834 mRNA upstream 54312 22702488 ~ 22711180 (+) True XLOC_015402
TCONS_00030830 mRNA upstream 88473 22659787 ~ 22677019 (+) False XLOC_015401
TCONS_00030829 mRNA upstream 115057 22640215 ~ 22650435 (+) True XLOC_015400
TCONS_00030827 mRNA upstream 150126 22592139 ~ 22615366 (+) False XLOC_015399
TCONS_00030836 mRNA downstream 3034 22795494 ~ 22803665 (+) False XLOC_015404
TCONS_00030838 mRNA downstream 16486 22808946 ~ 22826153 (+) False XLOC_015405
TCONS_00030839 mRNA downstream 31492 22823952 ~ 22846553 (+) True XLOC_015405
TCONS_00030840 mRNA downstream 59372 22851832 ~ 22861178 (+) True XLOC_015406
TCONS_00030843 mRNA downstream 214332 23006792 ~ 23024952 (+) False XLOC_015409
TCONS_00030832 other upstream 98792 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030805 other upstream 1389898 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 1522474 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030793 other upstream 1587827 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030786 other upstream 1691697 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030841 other downstream 193822 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030855 other downstream 465317 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 481872 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030864 other downstream 887413 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 1220790 24013250 ~ 24014943 (+) True XLOC_015433

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_06345732_06359362.mRNA True 3303 mRNA 0.50 10 CI01000004 6345621 ~ 6359521 (-)