RNA id: TCONS_00030830


Basic Information

Item Value
RNA id TCONS_00030830
length 1850
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_015401
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22659787 ~ 22677019 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atattcagcCTGTTATGTTGCCCTCTAGCGAAATTATCTTGTAAGGTCAAAGGCCAGCAGGTTAGCTCATTGTACTAATCATGGCTAAGCTTACTGGTCTTAGTGAGTTTCTCAGGACTATAAGACAAGGCCTTGATCAAACTGAACAAACCGCTCGAGCGGAGGCTCAGAATGGTGACTGTGTGCGAAAACGGAAGAGTCACGTGTCGAATCCTTTGCAAACTGAAACGAGCAAAACTGTGTTTGAAGAAAGCCCTAACAACTGGCAGGAAAATTATTTGGAGAGGTTGCCATCTGAGATCATCCTCAAGATTCTTTCCTCTCTGGATGCCTCCTCTCTGTTCAATATCAGCTTTGTCAACAAGCGGTTTCATGATCTGGCCAACAGCAATGCTCTGTGGTCTGTGTTGTATGCTTCCGAGATTGAGAAGAAGAAGTGGAGACCTCGAGTAAGTGTGGCAGAAGGCATGAGAAGCACACATGCGGAAGGGAAACCTTCAGGATACTGGAAGAAGATGCTGCTCAAGGAGATGGCAGGATACAAGGACACCATGTGGAAAACAGAGCTAAAACACAAGAACCCACACACCGGCATGCCAGCTCTCACTGAGGAAGTGCTCAGGAGATTACACATTCAGTGGGAAATCACACTTACGTTTAGGAATGGACGTGAAAGTGTctacaagcaaacacacactttCTTTGAGGATTCATCGGTTACTGTGTTTTGGAGTAATGGCTGCTGGCCATTGATGCACAATCTTGATAGCCTGAAGCTTCATGGAATCATGTGTCGACCTGTGGGAGCTCCTGGAGACAAGCCGAGGTGGCGCTCTCTGATCTGCAAGACAGCTACAGATAAATCTGTACACTGGGTGTTTCTTGGCTATGACAGGCTTGTGAAATTGCTGCAGTTTGGCAAAATCATCATCGGCGTCTGGCGGGGCAACTGGAGAATCGCGTTTATCATGATCAACCTGCACTTTCACAAACTGATTGAAAAGAGTCTTCTTGGGTCAAGATTTTGCCCCTACATACCAACAGAAGACAATGCTGTGGACCCTGACTGTGTTCGGCATGGATACACACTCCACATTGTGCTTCACAATCCAGTTCGCAGAATCATGTGTCAGCGTTTCTCCCCACTGTACACCAGCAGAGTGGGGTTGCAAGGAGAGTATGTGCAGCTAAACGCTGTTGATTTCTCTGATTCTTCCGAACACATGCCTGTGGTGAGGATCTGTCTACCATGGCAAGCAGAGGGACTGAAGGGAAATGTTGAGCGTTGCTGTATGATGACTCTGACAGTCCTGGATGAGGCTCAGCGCCCCTTCTGGTGTGTGAGTTCACCTGTGAGGATGTCCAGTAATCCGAGAGTGGTGGACGTGGAGTACGAAGGTGAGCAGTTCATCATCCTTTATGAGGACGCGGAGGGGAAGGTCAAAATGACCTTTGTGTGGATGGAGGAGTTCCAGCACTTCTTCTTGGTGCAGTTGTTTACTGTGTTCTCAGTAGCCAAAGTGAAAAAGCACTTTTGGGGGTGAATGACTTTGATTGTGCTTTGAGCTCGAAGAtcatttagaatatttttattttcctattttatttattttttgctctttgtTGATGGAGATATCTGAAATGTTTTGTTGTGGAGTTTCAAGGGCTTTAACGtttccaaatgaaaaaaaaaaaacagcaaatctCAAAGCACTTAATTTTTCATCAATTTAAAATTGGTAAATGTTGTTTACACACCTTTGTCATGTTGTTTCTCATTGTCAAGAATGAGAATACGTAGCACTGTTTACTATGCAAATAAACTTGCACTGTAGAACCAAAATGTTCAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-13 Orthologous to human FBXO15 (F-box protein 15).

Ensembl:

ensembl_id ENSDART00000043956

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030825 lncRNA upstream 111793 22547392 ~ 22547994 (+) True XLOC_015398
TCONS_00033261 lncRNA upstream 269156 22364007 ~ 22390631 (+) True XLOC_015394
TCONS_00030813 lncRNA upstream 688378 21882881 ~ 21971409 (+) True XLOC_015392
TCONS_00033517 lncRNA upstream 1122515 21534038 ~ 21537272 (+) True XLOC_015388
TCONS_00033260 lncRNA upstream 1225829 21433076 ~ 21433958 (+) True XLOC_015385
TCONS_00030837 lncRNA downstream 118538 22795557 ~ 22799328 (+) True XLOC_015404
TCONS_00033519 lncRNA downstream 234173 22911192 ~ 22916384 (+) False XLOC_015407
TCONS_00033520 lncRNA downstream 234320 22911339 ~ 22916384 (+) True XLOC_015407
TCONS_00033521 lncRNA downstream 308111 22985130 ~ 22992029 (+) False XLOC_015408
TCONS_00030842 lncRNA downstream 329773 23006792 ~ 23014044 (+) False XLOC_015409
TCONS_00030829 mRNA upstream 9352 22640215 ~ 22650435 (+) True XLOC_015400
TCONS_00030827 mRNA upstream 44421 22592139 ~ 22615366 (+) False XLOC_015399
TCONS_00030826 mRNA upstream 44421 22592139 ~ 22615366 (+) False XLOC_015399
TCONS_00030828 mRNA upstream 44838 22602301 ~ 22614949 (+) True XLOC_015399
TCONS_00030824 mRNA upstream 107724 22531185 ~ 22552063 (+) False XLOC_015398
TCONS_00030833 mRNA downstream 17363 22694382 ~ 22758590 (+) False XLOC_015402
TCONS_00030834 mRNA downstream 25469 22702488 ~ 22711180 (+) True XLOC_015402
TCONS_00030835 mRNA downstream 88473 22765492 ~ 22792460 (+) True XLOC_015403
TCONS_00030836 mRNA downstream 118475 22795494 ~ 22803665 (+) False XLOC_015404
TCONS_00030838 mRNA downstream 131927 22808946 ~ 22826153 (+) False XLOC_015405
TCONS_00030805 other upstream 1284193 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030797 other upstream 1416769 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030793 other upstream 1482122 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030786 other upstream 1585992 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030773 other upstream 1933976 20725713 ~ 20725811 (+) False XLOC_015372
TCONS_00030841 other downstream 309263 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030855 other downstream 580758 23257777 ~ 23257897 (+) True XLOC_015416
TCONS_00030856 other downstream 597313 23274332 ~ 23274781 (+) True XLOC_015415
TCONS_00030864 other downstream 1002854 23679873 ~ 23679989 (+) True XLOC_015426
TCONS_00030870 other downstream 1336231 24013250 ~ 24014943 (+) True XLOC_015433

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_06406371_06415282.mRNA True 2570 mRNA 0.42 10 CI01000004 6406371 ~ 6416418 (-)