RNA id: XM_036976909.1


Basic Information

Item Value
RNA id XM_036976909.1
length 3984
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110523300
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15464555 ~ 15591443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGCGCAACCCGCCCTGGCTCAGGCTAGCAGATAAAAGCCCGGGTAGTGATTGAAAGAGATGGTAAAAAGGAATTAGCACAGgcatagagagcgagagagagagagagcgagagatagagatgagcgagagagagatagagcgagcgagagagagagagagagcgagcaaggggGAGATTTTCCACAAAGCTTTTTTTCTTTCTGCGCTTGAACATCCCGGATAAAGCTGAGCTTGTAAAGTGGGAAAGTACGAGCACCAGACCTTCCTCAACGTCAATATTTTCTTACTTTTGATACTCTTTCAAGCCGGAATTCACGCTTTCGCTTTTTTTCTCCAACTCCCATTTCCAGATCTAGGACACGGTCATCCGTGGTGTAATAAAAAAGTAACAGGCACGAGAAAAAAGTAACAAGGAGACCGCATCAGATAACCAGAGTGGAGTACAGTAGCCAACACCACCGCGGGAGCCGGGTAGTGAATGGAGCCGTGCGGGGCTTATGGCAGAGGGGCGTTCGTATAATAATGGGACACGGAGTGGCTCTCCCAGATGAACCTTCGAAGACTATCACTGAGGCAAGGTGCCGGACCGGGGCATCACGACCTGATGGATGTATCTAAGTACGTCGTCACCTCATCCTCCCTCGTAGCGGACAGCTCTTGTCTCTCCCAGCGGAAAAGGACCTCTGAAGTATGGATTTGTTCTGCTGATATCCCAACGACCCCTACcgccaccaccacagcactggcACCACTATGGTTGAAGTAGATGTGAAGTTTCATAGTGACATTCGCCTCCCCCTGGTCAATTTTTTGTCCGTCTTTTCCAAACCAGGCGTCAAAACAATAAAGTGTCATTTCCTAAAGAAGCCGTGATTATTTGTGTGTCCACTTCTATTGAACGGCTCTACAGTTATTTATCTTAgtgcatttgtatttgttttccCTCATCACTGAACCGTCCCCTATCGCTCAGTTGAGCACGTAGACTCATCATGGTGATGCCAAAGTTACTTTCTGTCTCTGTATGATCCCTAGTCGCGTTCCATGCTTTTCGCCCAAGCTCTGACTACCGTGGCCTCTCTTGCCCTTCACCGCCAAACCCCACTCATCGTCAGACCCCGCTCGTGGCTTTCCCAGGACCTGCCATGCTCTGTCAGGCCGTGTTGCTCCTCCTGCACTGCTTCGCCTCTTTGACACTGGGCCAGTACGACCTGTGCAAGTCCCTGGTGAGCACGGACGATGGCGCGGTGTGGGAGCAGTATGCATGCCAGCCCAAGGCCCAGTCCATGAAGGACTACATGCGGGTCAAGGTGGACCCACCAGGCATCACCTGTGGGAACCCACCTGAGAGATTCTGCACTCTGgaGAACCCGTACCTGTGCAGTGATGAGTGTGATGCCTCCAACTCGGACCTGGCCCACCCTCCCCAGCTGATGCAGGACCGCGAGCGCACAGGCCGCATCACCTACTGGCAGACAGTTACATGGTCCCGTTACCCAGAACCCCTCTTGGCCAACATATCCCTGGCCTGGAACAAGAGCCTGGAGTTGACCGATGACATCGCCATCACCTTCGAGTACGGCCGTCCCACCATCATGGTGCTGGACAAGTCCATGGACCATGGTCGCACTTGGCAATCCTACCAGTTCTACGCCGATGATTGTCTAGATGCCTTCAACATGCCGCCGAAGCTTGTCCGTGACCTGTTGCCTGCAAATATTACCCGTGTCATCTGCACTGAGCAGTTCTCACGCTGGGTGGGGTCGAAGAACGATAAGAATGTGAAGTTCGAGGTTCGTGAACGTTTTGCGGTGTTTGCCGGACCGAGGTTGCTCAACATGGACAGCTTGTACACGCGCATGGAGAGTATGAAGGGCTTGAGGGACTTCTTTACCTTCACTAACCTCCGGCTGAGGCTGCTCCGGCCAGCCCTGGGGGGAACGTACGTGCAGAGAGACAACCTGCTCAAGTACTTCTACGCTATCTCCAACATTGAGGTGCCCGCCAGGTGTAAGTGTAACCTACATGCATCGCTGTGCCTGCTGCAGGAGGGAGACCTCCAGTGTCAGTGTGAACACAACACCACGGGACAGGACTGTCAGCGCTGCAAGAAGGGCTTCAAAGCCAAGTCCTGGAAGGCTGGCTCATACCTGCCCACACCCAACGGATCCCCCAACACCTGTGCAGTCGCTGGTGCCCCCATGGGCGGTGGTTCTAaCTGTGAGTGCTACGGCCACTCTAACCGCTGCAGCTACATAGACTACCTGAACATCGTGACGTGCGTCAGCTGCAAGCACAATACCAGAGGACAGAACTGCCAACACTGCAGACTGGGATACTTCAGAAACGCGTCCGCCGAACTAGACGACGAGGGTGTCTGCATCGAGTGTAACTGTAACCAGATGGGTTCTGTCCATGACCGGTGTAATGGAACAGGCTTCTGCCAGTGTAAAGACGGCGCTACGGGGCCCAAGTGTGATGACTGTTTCCCTGGGTACTACTGGAAACAAGGCTGTTACTccaaCGTGTGTGACGAAGAACTGCTCCTATGTCAGAACGGCGGGACGTGCTCCCAGAACCAGAAGTGTATCTGTCCCCCAGAGTTTAAGGGCATGCTGTGCCAACAGTCACGCTGCGAGGGGGACAAGGCCTGCAACACAGCCTGTACCCCCCACCTCCTCGCCCCCCTACTGCTCTGTGTCCTGCTACCCCACCTTCTGGCCACTTTAACTGCACACTGAGTCACCTGCTGCCCCCTCAAACACAGGGGgaactgttgtgtgtgtggatCCTTAGAGGAGGTTAGGTTGGGAAAGGTCTGCAaatacacacccacccacacacacacacctcactgacTCGGGGAACGTGTGAGAGTAAAACAAGAGAATGACttcagagagaacagaggaaggtGGAGGAAAATCATACAACCAaaccccccgtctctctccctttaATCTTGAGCTGGAGGAATCTCGATTTCATACCAAAAAGCATAATTATTATTAAACGAGCAAACGACTGTTCGTTTAACACTTTAAATCACTACTGTTCACTATGAAGAAAAGGGAGGAATTGCTGATGTAACACAAGTACATTTCCTTTGTCTTAATTCATTGAATTAATGTGCCCCTCTTCTCGAGACCCTGCACTTActgctccagacagacagacggggagtGTGTTTGGCTAGACTTGGGGAGGGCTGGGCTGGGAGCAGATTTGCTGCTGAGGTCTATGTAGAATATACTGTAAACCAGGTTTCACATCTTCGACTCAAAATTACAGACTTGTTTTCAcctttgacattttttttatttcatcttcTTCAGTTGTTATTGTATGTTATGTGCCCACCGACAGACGCTGAGATTATACATCATTATTACAATATCCAGAGGGTTATCAATATTAAGATTTTAGTCACTATAATGGTTGTTATAGGAATGAGTCGCCACAGTTTAGCAAGATTTTATCTTCACACAGTATTCAGGAGTAAAACAGAATTTAAACTTATCAGTCTGAaagaagagaaaaaaagaaaagtatCAATATAATATGACATTATTTGAATAGTTTTGTAGAGATTATTTTTGTTTGAAGTTATAATAATAAATGAACTATTCCAGATGAGCATTTTATTACACTGTAAACTTCACAGTAAATGTGTGCTATTTGTTTTTACTTGTACATTCTTTCAAGAGAACAAATGTGTCACGACCAAAACGGTCAGTTGGAACTACTCCAGTGGAAGTGTCTAGGTTGCAGAAAAGTACAAAAAGATGACCTCATTTATTGGTAGgggagtggggtaagttgagccacccctTACTTCTAGGAAACCGTACACAAAATGAATCATGTGACCAAATATCTAGAAAGAGGGCATCATTTCATAGAGTCTGTGAAGGAAACATCCACATGGAAAAAATGGTAAGTAAgttaagtaaaataaaaaatagattgTCTCAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422155 lncRNA upstream 43129 15421280 ~ 15421580 (+) True G371454
TU422154 lncRNA upstream 45408 15418977 ~ 15419301 (+) True G371453
TU422153 lncRNA upstream 45977 15418493 ~ 15418732 (+) True G371452
TU422121 lncRNA upstream 116862 15347128 ~ 15347847 (+) True G371420
TU422064 lncRNA upstream 208391 15256102 ~ 15256318 (+) True G371367
TU422261 lncRNA downstream 22762 15614205 ~ 15615135 (+) True G371544
TU422292 lncRNA downstream 59535 15650978 ~ 15651436 (+) True G371567
TU422322 lncRNA downstream 96783 15688226 ~ 15688447 (+) True G371597
TU422323 lncRNA downstream 98608 15690051 ~ 15698691 (+) True G371598
TU422341 lncRNA downstream 121527 15712970 ~ 15713201 (+) True G371610
XM_036976892.1 mRNA upstream 319189 15117224 ~ 15145520 (+) False uck1
XM_021601872.2 mRNA upstream 319189 15138641 ~ 15145520 (+) False uck1
XM_036976887.1 mRNA upstream 367952 15086878 ~ 15096757 (+) True LOC110519478
XM_036976894.1 mRNA upstream 389151 15065627 ~ 15075558 (+) False LOC110518158
XM_036976895.1 mRNA upstream 410356 15047739 ~ 15054353 (+) False LOC110519479
XM_036976915.1 mRNA downstream 158748 15750191 ~ 15756122 (+) False st6galnac4
XM_021601899.2 mRNA downstream 161461 15752904 ~ 15756190 (+) False st6galnac4
XM_036976916.1 mRNA downstream 161568 15753011 ~ 15756122 (+) True st6galnac4
XM_021601897.2 mRNA downstream 164816 15756259 ~ 15772026 (+) False st6galnac6
XM_036976914.1 mRNA downstream 164864 15756307 ~ 15772026 (+) False st6galnac6
TU421847 other upstream 335892 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 411153 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 659238 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1096548 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 1138814 14321104 ~ 14325895 (+) True G370382
TU422347 other downstream 200116 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 628163 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1144199 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1278991 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1278991 16870434 ~ 16882185 (+) True G372618

Expression Profile