RNA id: XM_021601921.2


Basic Information

Item Value
RNA id XM_021601921.2
length 2221
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110523327
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16454595 ~ 16470342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCACTCATCACTTGCCTGTCAACTTTTTTTCGAAATCTTTTTTTGTCTCACATTTAATACCTCATGGCAAGCCACTTGCACAAACGtaagttcaacatctagtttcgATTTACATTTgcttgagttgtcaactaacgtgaattgaACGTGAAATCAACGGGAGAAAATAAATTCCCTTACGTTGTTGGCGTTTTGCAAAccttgaaatgacgtggaaaccacGTTGATTCATCCAGTTGTTGCCCAGTGGGAAGATTCTTTTTTTTAATCGTTTGTCTTTTTGGGGTGGGACATTGTAaaagagggccagagagagagagagagagaaagaaaaagacagagagagaatagtccAGATGTGAGATGTGACGCGCTGGCGGACGAGCCAGACACGACGATCCAGTGTTATTGATGAAGAATAGAAAATGTTCTACCATCGAGGGAAAGTCTGCGCTGTTGATGGGCTTTCTAATTTATAACGggtgtatgtgtgtgtctggttaACCGTCAGAGGTGAAAGATCAGAGGTCACAGCAAGTCGGAGGcaagaggtcaggggtcatgtCTACAGTGGCATTCCAGAACCTTCCTCTCAACATTTATATGGTCATCTTCGGGACCGGAGTCTTCGTTTTTGTCCTGAGCCTCATCTTCTGCTGCTACTTCATTAGtaAACTGAGGCACCAGGCCCAACGAGAGAGGTTTGGATATAAAGCGGTGGTGTTCAAAGGGGATACAAAGAAACTCAATCTACACGGGCAGACATGTGCGGTCTGCTTGGAGGACTTCAGAGTGAAAGATGAGCTAGGAGTGTTGCCATGCCAACATGCCTTTCACCGGAGATGCCTGGTGAAGTGGCTGGAGGTGCGCTGTGTGTGTCCCATGTGTAACAGGCACATCGCTGGGCCACCTGAACAACGCCACAGCCTGGGCACACTGCTGGATGAACTGGTGTAGTGGGATGCTATGGCGATACAGCTGGAAATGAGTGGTGTAGCAAGTTGATATGACGATGCAGCTGGAAAGGACTAGTGTAGGATGTTGCTATGGTGGTACGACCGGAACAGACTGGTTTAGAGGTCCCGGTACGGACTATACATTGCTGAAGCAAAATGACCTGACAATCTATTATTAGGGACCAGTGACGAAACCACATGACACCATAACTATAGGGAAACAGATCTTCAGACTTCACACCCTCATGTATTGATAAGGAGATGGGACAcacgggcggcaggtagcccatcAGTTACAGCTTTGGGCCAGGTTGCttgtttgaatccccgagctgaccaaGGTGTaaatctgtcgacgtgcccttgaaAAAGGAGCAACCCTAATTACTCCagggttgctgttgataatggcagaccctggctgtgaccccactctctgggGGTGTCCCAGGGAGAGTTGGGATCTgcaaaaaacaaatgaaatatgacaaatataagcacccaccaaattattaccattatgggtactgtagtatGTCATGCTACACCTTATCATGTAGAATCAGTCATTTAATGACTGAATGCCGAGCCTCTACAATACGCACTCCACCAGCATGCCCACTTTTAAACAGACTTCTTCATGAAGAACAGATTCACAAAGCCACAAAATCTGGGACAAAAACTCTGCTCTCAACCCTGTCACTGTCTGGAAGAGGGGCTACCTGTGAAAAGAGAGCTTGAGAACTCAAGGGATGTATTGCTGAATGCCCAGATAGAAATATATGATGTAGAACAGACATGCCTTTCTGAAATCTGGAGTGAGGAATTGTGTCAGCTCTGTTCATGGCATATCTATCTGCAATGTCCAGTATGTTACAGCCTGGGGATGATGACATACAGGTATCAATATTgtgatacatttttttctgactgtgtcacatgtctgtctgtctgtcaggtctgtgtgtgtgtctgtgtgtcaggtcTGCATCCTGCTTATATTAAGTGGGTGTGACATATTATGTTATGAACTGTAGGAGGGACCAACAACTTTTTTTATCCTGACTAGTATTTCCTTGCCAAACAAGCCTTTCCAGTTAATTATATTTAAAGTGAAGGGAGATTTGGAACAATTCCTTTCTGTCTGGGGACGTGTCTGAAGCACAGGCACTGCCCAATGGCAAAGTAAACATTCCCCATGTGTACAATATCTGCTTTTGTAAATATCTGAAAATACAACGTGTCCTGTTTTGATCTATGTC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423215 lncRNA upstream 99489 16355092 ~ 16355312 (+) True G372345
TU423212 lncRNA upstream 101561 16353024 ~ 16353240 (+) True G372342
TU423203 lncRNA upstream 119248 16335185 ~ 16335553 (+) True G372333
TU423201 lncRNA upstream 123454 16331091 ~ 16331347 (+) True G372331
TU423199 lncRNA upstream 125143 16329408 ~ 16329658 (+) True G372329
TU423246 lncRNA downstream 6184 16476526 ~ 16479402 (+) True G372374
TU423254 lncRNA downstream 88314 16558656 ~ 16559057 (+) True G372381
TU423361 lncRNA downstream 102502 16572844 ~ 16573465 (+) True G372480
TU423386 lncRNA downstream 136990 16607332 ~ 16607737 (+) True G372505
TU423387 lncRNA downstream 139160 16609502 ~ 16609777 (+) True G372506
XM_021601919.2 mRNA upstream 17069 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA upstream 17069 16434275 ~ 16437732 (+) True LOC110523326
XM_021601910.2 mRNA upstream 596441 15852569 ~ 15858360 (+) True ptges
XM_036976904.1 mRNA upstream 615342 15816853 ~ 15839459 (+) True usp20
XM_021601940.2 mRNA downstream 46458 16516800 ~ 16557705 (+) False pargl
XM_021601938.2 mRNA downstream 46471 16516813 ~ 16557705 (+) False pargl
XM_021601937.2 mRNA downstream 53895 16524237 ~ 16557705 (+) True pargl
XR_005051667.1 mRNA downstream 220563 16690905 ~ 16693430 (+) False LOC110523336
XM_036976935.1 mRNA downstream 241840 16712182 ~ 16726009 (+) False polm
TU423147 other upstream 233868 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 659679 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1325984 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1401245 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1649330 14804661 ~ 14805471 (+) True LOC118964542
TU423245 other downstream 265300 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 400092 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 400092 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1233771 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1597101 18067443 ~ 18083365 (+) True arhgef28a

Expression Profile