RNA id: XR_005051681.1


Basic Information

Item Value
RNA id XR_005051681.1
length 1740
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118964574
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21760374 ~ 21766141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGACCTGAAACCGCGGCGCTTTGCCATTTAAACTATATATTTTGCAGCGGTTGTAGGGTTTAAATGTCGACCCTCAGATATTACAAGACACATCCAACTATCTAACAACGTAGGCTGGTGCAGTTTGAGTATCAGAGaatgcagagagggaggaggcagaggagttggaagtGCAGACAGAACGTTACATCCAAGACCTCCAGCAGGCCCTGAGTGGGACTGGAACCTCCTCTACTGACTACAGCTTCACCTTGACCTCTAACCCCGGCCTATTCCATGGGTTATGTGGCAAGTCATAACATAGGCTGTGTTTTCTGCCCCAACAAGTTAAGCCATTTAACGACTTTCCTGAACTATAACCCTTCCCAAAACTTAACCCTTGGACATGATCCTTAAAAATGCTAATATCGGAAACCATGACTTGAATTCAATTTGTGTCACAAATGCTAAAATattagcatttggaaacagtgGCAGGGAAaataaaaccaaagcatggattgctgtcaaaCCTTGTCCAAAGACTGTTTATaagGACCCTCTAACAAGCACTTATTGAGCTCTAACTAGCACCCAGGAAGGCATTGAACCCAGGAAGGCATTGAACCCAGGAAGGCATTGAACCCAGGAAGGCATTGAACCCAGGAAGGCATTCATGTGGTGAAGTAACTCTAGGCTCTAGGAGGTTGCCATGCGTTAAGAGTGTCATATACCTGAAGGCCAGTGGTGTGATGCAATACCGCTATGTTATTATCACAACCTTGGGAAATTCGGCTTGCAGCTTCACATTATATTAAAACACACAAGTCAGTCAGGCAATCATACCAACAGCGGGGTTGTATTGGTACTACAGTTGATGGATCATTCAGGAGTGTTTGTTGTTGCTTTCGAGTGCTAATATAAGGCTCTGTGATGTCATCCTATGATATTCATGTCTTCCTCCCACTCTGTGCTTTGACAGGAAAATGATCCTCATCACGTTGTAAAGTAGAATACAGCACTATCACTAtggaggtaaacacacacacacagccaactaACAGCTTAGTGACGGTCAGTGTGCTCAGAGGTCGaccacatgcgcacacacacacacatctgctttGAGCTGTGTTGCCATAGTAATAATGTAATGATAGAATGGAAATCCTAGTGCATGTGTTTCAGTAGAAAATGGAAATGAATAGAATTGACTGTTTCAGAAACGAGAGTTTTGGACAAGGCCATTCACAGAACACACTGTGGTGTATCATCCCTGAGGAAAAAGCGCCTAACATTTTTCTGTTGCTCAACAGTTAATAATAAATATGAATTAATTCATCATAGAGATATGACTCATTACTATTAAAGGGTCCATGTCTAatgtggggtggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaatccccgagctggccTGGACTGGAGAGTTAGAAACATCTGGGTGGTTGTTGGGTAGGCCTTGATGTAAAGATTGGAATGTGATCTTCATGTTTTTACTGCACATGACTGTCCCAGAGCATCAGCCCCAGGACGGCTCCCACATAGCTGTGAGTGGATTATCACTATTATCGTGCCAGCAGTGATCAGTTTATCATCATAACAGCAACATGCGTTTGACTATAaacgccctgtagcactcacttccgtcatcatgaagtgctttgagagactagtcaaggatcatatcacctccatcctacctgacacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430035 lncRNA downstream 24178 21735675 ~ 21736196 (-) True G378324
TU430031 lncRNA downstream 29248 21730133 ~ 21731126 (-) True G378322
TU430012 lncRNA downstream 74984 21682396 ~ 21685390 (-) True G378304
TU430005 lncRNA downstream 90324 21668859 ~ 21670050 (-) True G378297
TU429978 lncRNA downstream 130624 21629513 ~ 21629750 (-) True G378275
TU430081 lncRNA upstream 30284 21796425 ~ 21796737 (-) True G378364
TU430097 lncRNA upstream 62433 21828574 ~ 21828929 (-) True G378380
TU430098 lncRNA upstream 63325 21829466 ~ 21829679 (-) True G378381
TU430100 lncRNA upstream 68246 21834387 ~ 21834765 (-) True G378383
TU430102 lncRNA upstream 71233 21837374 ~ 21837594 (-) True G378385
XM_036976543.1 mRNA downstream 25968 21703680 ~ 21734406 (-) True LOC110523418
XM_021602087.2 mRNA downstream 222647 21535928 ~ 21537727 (-) True LOC110523410
XM_036977037.1 mRNA downstream 296182 21460821 ~ 21464192 (-) True LOC110523405
XM_036977034.1 mRNA downstream 318494 21361896 ~ 21441880 (-) True grk3
XM_036977036.1 mRNA downstream 363776 21361896 ~ 21396598 (-) False grk3
XR_005051682.1 mRNA upstream 191651 21957792 ~ 21959442 (-) True LOC110523425
XM_021602101.2 mRNA upstream 237196 22003337 ~ 22021560 (-) True LOC110523426
XM_036977052.1 mRNA upstream 267682 22033823 ~ 22037524 (-) False LOC110523428
XM_021602109.2 mRNA upstream 267682 22033823 ~ 22037929 (-) False LOC110523428
XM_021602108.2 mRNA upstream 267682 22033823 ~ 22037933 (-) False LOC110523428
TU429645 other downstream 730591 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 1055234 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 1065666 20694096 ~ 20694708 (-) True G377800
TU426081 other downstream 3201207 18558140 ~ 18559167 (-) False G374786
TU430076 other upstream 25521 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 411124 22177265 ~ 22179313 (-) True LOC110523434
TU431801 other upstream 1033559 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 1781059 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 1943657 23709798 ~ 23711891 (-) True G380610

Expression Profile