RNA id: XM_036977052.1


Basic Information

Item Value
RNA id XM_036977052.1
length 2738
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110523428
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22033823 ~ 22037948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAACGTCTTCCAATGGCAAGGTAAGCTAGTTTCCGAGAACCCTATCGGATCCCTTTCTATATCAACGGCAGCACAGATAACATCACTGCATAGCTActgctgtagctagctacaaGCTACATCTCATCTGACCACAGTTGTGGCGCTGTATGGATCGCTGACAGACCTGCTGTCCGTCGCTAGCAGTAAACTGGGAATCCGAGCCTCCAGCGTTTATAACGGGACAGGCGGTCTTATAGACGACATAACGCTTATAAGGGATGATGACGTGCTGTATGTGTCTGAGGGCGACTCCTTTGATGATGCGAGAAAGACAAAGTGTGCAGACCCCCAGGATGACCCTGGTTGTCCAGACTGGTTCCAAACTCACACTGATTGGCTGACGCTCAACGTTGGGGGTTGCTGCTTCACCACCACACGGTAACCATGACAACCTTGCAGTCTGTCCACTCCATTCTATTGATACACATaacctgtgtggtgtgttttctcctcaGGAGCACTCTGGTCAGTAAAGAACCAGCGAGCATGCTGGCCCACATGTTCCGAGACAAAGatgtgtggggTAATAAACAGGACTCCCATGGTGCCTACCTGATAGACAGGAGTCCAGGCTACTTTGAACCAATCCTCAACTACCTGAGACACGGACAACTCATCATCAATGACGGCATCAACCCACTGGgGGTCCTGGAGGAAGCTCGGTTCTTCGGCATTGAGCAGCTGGCTGAGCAACTGGAGAACCTgatcaagAGTTCCCAGCCTGCTGATGACCACTCCCCTCTAACCAGGAAGGAGTTTGTACGTTTCCTGTTGGCCACACCCACCAAGTCAGAGCTGCGCTGTCAGggtctgAACTTCAGCGGTGCAGACCTGTCTCGCCTGGACCTGCGCTACATCAACTTTAAGATGGCCAACCTGAGAGCTGCCAACCTCACTCACGCCAACCTCAGTGGTGCCAACCTGGAGCGGGCAGACCTGTCCTCAGCCTGCCTTGacgtgtgttactgtggagCTAACCTACAGGGTGTTAAGATGCTGTGTTCTAATGCGGAGGGTGCATCTCTGAGAGGCTGTAACTTTGAGGACCCTGCTGGAGTCAAAGCCAACATGGAGGGTGCCAACCTAAAGGGGGTGGACATGGAGGGTAGTCAGATGACAGGTATCAACCTGCGAGTTGCCACACTGAAGAACGCCAAGCTGAAAAACTGCAACCTGAGAGGAGCTACACTGGCTGGCACAGACCtggagctccctccctctctttctccccctctctctcagaacTGTGACCTGTCTGGATGCGATCTACAGGAAGCTAACCTTCGGGGCTCCAACGTGAAGGGAGCCATCTTTGAAGAGATGCTGACTCCACTGCACATGTCTCAGAGTGTACGATAACCCCACTGCACATGTCTCAGAGTGTACGATAACCCCACTGCACATGTCTCAGAGTGTACGATAACCCCACTGCACATGTCTCAGAGTGTACGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGAGTGTACGATAACCCCACTGCACATGTCTCAGAGTGTACGATAACCCCACTGCACATGTCTCAGAGTGTGCGATAACCCCACTGCACATGTCTCAGAGTGTGCGATAACCCCACTGCACATGTCTCAGAGTGTGCGATAACCCCACTGCACATGTCTCAGAGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCCCAGCGTGTGCGATAACCCCACTGCACATGTCCCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCGATAACCCCACTGCACATGTCTCAGCGTGTGCAGTAGGGTTATCGTACACGTCTCAGATTGTGCTACTCCTCCACTGaaccccacacaaacacactcctggTCCTTAAGTCATTCCTCCCAACCCCCTGTGTAGCTCACCACTGATTTTCTCTTCTCAGAAGAGACTAGTTGCCCAATACTATATCAACCCTTAGGAGTCACTTAGCTGCCCGAGGGCAGTGGTTGTTCCTCTGACATGAGTGAATGTGAAACGAGACCCAGGAATGTTTTAGTTCTGGTACACATGTTTGTATATATGGCGTAAAAGGTTCTACATGTTTGTATATATGGCGTAAAAGGTTCTACATGTTTGGATAATAATATATGTATTTTGAAGGTAGATACGGCAGATTCGGGCCAACTTCCGCAACAACAAACGGTGTGAGGCTAAACTTCTCGCTGTTTTGGTCTCGCAGCTATCACGTTGCAGCAGTGTGAATCTGAGGTTCATGGCAAAAGTTATATGGCTGAGTCTCACTTTAATGGGTCCACATGTACATTATCCTACATGGACCATCTTCTCCATGCCAGGGGTTGGATTTCCATCACATGGTGCTACACTTTATCATTGTGAAAAGTTGTTCTATTTTTGTATCACACTATCACTGTATAATTACTGTCTTATGTCTTTTGCAATAAAGGCTCTAGCCTGTTTTTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430281 lncRNA downstream 52961 21962061 ~ 21980862 (-) True G378539
TU430275 lncRNA downstream 84010 21949602 ~ 21949813 (-) True G378535
TU430273 lncRNA downstream 86298 21947148 ~ 21947525 (-) True G378533
TU430272 lncRNA downstream 87054 21946561 ~ 21946769 (-) True G378532
TU430270 lncRNA downstream 87751 21945833 ~ 21946072 (-) True G378530
TU431296 lncRNA upstream 1041 22038565 ~ 22038803 (-) True G379421
TU431298 lncRNA upstream 4425 22041949 ~ 22042274 (-) True G379423
TU431313 lncRNA upstream 21028 22058552 ~ 22058825 (-) True G379436
TU431314 lncRNA upstream 21677 22059201 ~ 22059438 (-) True G379437
TU431315 lncRNA upstream 22418 22059942 ~ 22060338 (-) True G379438
XM_021602101.2 mRNA downstream 12263 22003337 ~ 22021560 (-) True LOC110523426
XR_005051682.1 mRNA downstream 74381 21957792 ~ 21959442 (-) True LOC110523425
XR_005051681.1 mRNA downstream 267682 21760374 ~ 21766141 (-) True LOC118964574
XM_036976543.1 mRNA downstream 299417 21703680 ~ 21734406 (-) True LOC110523418
XM_021602087.2 mRNA downstream 496096 21535928 ~ 21537727 (-) True LOC110523410
NM_001164066.2 mRNA upstream 5257 22042781 ~ 22045492 (-) True march5
XM_021602111.2 mRNA upstream 30377 22067901 ~ 22087866 (-) True LOC110523430
XM_021602118.2 mRNA upstream 139804 22177328 ~ 22179322 (-) False LOC110523434
XM_036977055.1 mRNA upstream 142151 22179675 ~ 22188902 (-) False LOC110523433
XM_036977057.1 mRNA upstream 142151 22179675 ~ 22188902 (-) False LOC110523433
TU430076 other downstream 241830 21791662 ~ 21791993 (-) True G378359
TU429645 other downstream 1004040 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 1328683 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 1339115 20694096 ~ 20694708 (-) True G377800
TU426079 other downstream 3474656 18558239 ~ 18559167 (-) True G374786
TU431328 other upstream 139741 22177265 ~ 22179313 (-) True LOC110523434
TU431801 other upstream 762176 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 1509676 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 1672274 23709798 ~ 23711891 (-) True G380610
TU432686 other upstream 1721515 23759039 ~ 23761807 (-) True G380648

Expression Profile