RNA id: TU430035


Basic Information

Item Value
RNA id TU430035
length 463
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G378324
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21735675 ~ 21736196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtattcaACAAGCCCATGTGTTTCCAGTCCTGCCTAACAGGCCACCTGATACACACTTCCTGTTTCCACATGGAGACCAGGCTGTAAACCTGCTTCATTAGCCCAATGACCTGTTCCCCCTCCTTCCTTGCACTTGAATCTCAGTAGCATACATTCCAATGTGGTTTTTCATACAGGTATACAGACATTGGTTTGAATCTCAGTAGCATACATTCCAATGTGGTTTTTCATACAGGTATACAGACATTGGTTTGAATCTCAGTAGCATACATTCCAATGTGGTTTTCATACAGGTATACAGCCATGGTGCGAGAAAAAAAAGAACCCAGCACACTCTCATTGCTCTGATGCAGTACATGCAATAAATACCAGTACATTGTTTTACTGTTTGGATTATACTGacgttttagtgtgtgtgttggaatggAGGGATCCCCGTCATCGTCCAAGGCTGCAACCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430031 lncRNA downstream 4549 21730133 ~ 21731126 (-) True G378322
TU430012 lncRNA downstream 50285 21682396 ~ 21685390 (-) True G378304
TU430005 lncRNA downstream 65625 21668859 ~ 21670050 (-) True G378297
TU429978 lncRNA downstream 105925 21629513 ~ 21629750 (-) True G378275
TU429977 lncRNA downstream 106436 21629018 ~ 21629239 (-) True G378274
TU430081 lncRNA upstream 60229 21796425 ~ 21796737 (-) True G378364
TU430097 lncRNA upstream 92378 21828574 ~ 21828929 (-) True G378380
TU430098 lncRNA upstream 93270 21829466 ~ 21829679 (-) True G378381
TU430100 lncRNA upstream 98191 21834387 ~ 21834765 (-) True G378383
TU430102 lncRNA upstream 101178 21837374 ~ 21837594 (-) True G378385
XM_036976543.1 mRNA downstream 1269 21703680 ~ 21734406 (-) True LOC110523418
XM_021602087.2 mRNA downstream 197948 21535928 ~ 21537727 (-) True LOC110523410
XM_036977037.1 mRNA downstream 271483 21460821 ~ 21464192 (-) True LOC110523405
XM_036977034.1 mRNA downstream 293795 21361896 ~ 21441880 (-) True grk3
XM_036977036.1 mRNA downstream 339077 21361896 ~ 21396598 (-) False grk3
XR_005051681.1 mRNA upstream 24178 21760374 ~ 21766141 (-) True LOC118964574
XR_005051682.1 mRNA upstream 221596 21957792 ~ 21959442 (-) True LOC110523425
XM_021602101.2 mRNA upstream 267141 22003337 ~ 22021560 (-) True LOC110523426
XM_036977052.1 mRNA upstream 297627 22033823 ~ 22037524 (-) False LOC110523428
XM_021602109.2 mRNA upstream 297627 22033823 ~ 22037929 (-) False LOC110523428
TU429645 other downstream 705892 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 1030535 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 1040967 20694096 ~ 20694708 (-) True G377800
TU426081 other downstream 3176508 18558140 ~ 18559167 (-) False G374786
TU430076 other upstream 55466 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 441069 22177265 ~ 22179313 (-) True LOC110523434
TU431801 other upstream 1063504 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 1811004 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 1973602 23709798 ~ 23711891 (-) True G380610

Expression Profile