RNA id: TCONS_00032627


Basic Information

Item Value
RNA id TCONS_00032627
length 413
RNA type TR_V_gene
GC content 0.42
exon number 2
gene id XLOC_016601
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36276985 ~ 36277780 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCAAGTTATGTCCAGAAACCGTGCATGCTGAAAGGTAACCGTGCTAAAGATGCGATCACTCCATATAGGGATGCAGTTTTTGCcagtgagagtgagagagtgaaacTCTCCTGTAACTACACTGGTTCTGTTGATAGTCTTCACTGGTATCGACAGTATCCCGGTTCACGACCACACTTCCTCATACTGGATTACTCTGGATTTGTTACTCATGCTAATCCTCCATTTGATGGAATCTCCATTAAACACAGAAAAGAAAACAGCAGTGTGGATCTGCTGATCTCCTCTGCTGCAGTGTCAGACTctgctgtgtattactgtgcTCTGAGGCCCACAGTGACAGGAAAACACTTCACATCATACAAAAATCTAAAAGATACTCACATTTCTAGTATTGTGAAGGAATATAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-67 No description available

Ensembl:

ensembl_id ENSDART00000160625

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033881 lncRNA downstream 198347 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032580 lncRNA downstream 543233 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033880 lncRNA downstream 543758 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032579 lncRNA downstream 655118 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033381 lncRNA downstream 660898 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00033382 lncRNA upstream 101459 36379239 ~ 36425603 (-) True XLOC_016619
TCONS_00033882 lncRNA upstream 386990 36664770 ~ 36673919 (-) False XLOC_016631
TCONS_00032659 lncRNA upstream 393472 36671252 ~ 36673918 (-) False XLOC_016631
TCONS_00032660 lncRNA upstream 393525 36671305 ~ 36673918 (-) True XLOC_016631
TCONS_00033883 lncRNA upstream 469398 36747178 ~ 36753894 (-) False XLOC_016633
TCONS_00032581 mRNA downstream 236165 36026183 ~ 36040820 (-) True XLOC_016554
TCONS_00032577 mRNA downstream 709875 35510048 ~ 35567110 (-) False XLOC_016551
TCONS_00032576 mRNA downstream 710010 35509418 ~ 35566975 (-) False XLOC_016551
TCONS_00032575 mRNA downstream 710047 35509418 ~ 35566938 (-) False XLOC_016551
TCONS_00032574 mRNA downstream 1173916 34986201 ~ 35103069 (-) True XLOC_016550
TCONS_00032644 mRNA upstream 69150 36346930 ~ 36350082 (-) True XLOC_016618
TCONS_00032645 mRNA upstream 212325 36490105 ~ 36490570 (-) True XLOC_016620
TCONS_00032646 mRNA upstream 216069 36493849 ~ 36494308 (-) True XLOC_016621
TCONS_00032647 mRNA upstream 218856 36496636 ~ 36497113 (-) True XLOC_016622
TCONS_00032648 mRNA upstream 222106 36499886 ~ 36500347 (-) True XLOC_016623
TCONS_00032626 other downstream 3342 36273162 ~ 36273643 (-) True XLOC_016600
TCONS_00032625 other downstream 6705 36269807 ~ 36270280 (-) True XLOC_016599
TCONS_00032624 other downstream 10089 36266386 ~ 36266896 (-) True XLOC_016598
TCONS_00032623 other downstream 12129 36264323 ~ 36264856 (-) True XLOC_016597
TCONS_00032622 other downstream 13312 36263197 ~ 36263673 (-) True XLOC_016596
TCONS_00032628 other upstream 1200 36278980 ~ 36279485 (-) True XLOC_016602
TCONS_00032629 other upstream 15116 36292896 ~ 36293427 (-) True XLOC_016603
TCONS_00032630 other upstream 16040 36293820 ~ 36294338 (-) True XLOC_016604
TCONS_00032631 other upstream 19521 36297301 ~ 36297784 (-) True XLOC_016605
TCONS_00032632 other upstream 24499 36302279 ~ 36302732 (-) True XLOC_016606

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_14618502_14618962.mRNA False 811 mRNA 0.36 2 CI01000004 14618156 ~ 14619037 (-)
rainbow trout (Oncorhynchus mykiss) TU830707 True 1201 lncRNA 0.41 2 NC_048572.1 61344610 ~ 61380805 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_484 True 400 V_gene_segment 0.46 2 NC_053122.1 1560679 ~ 1561168 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_215 True 72 tRNA 0.56 1 NC_053115.1 35926423 ~ 35926494 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_215 True 1598 V_gene_segment 0.55 2 NC_056700.1 16847691 ~ 16849363 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_484 True 82 tRNA 0.60 1 NC_056702.1 25999503 ~ 25999584 (-)
mexican tetra (Astyanax mexicanus) LOC111188983 True 570 V_segment 0.45 2 NW_019171803.1 35585 ~ 36291 (+)