RNA id: TU584334


Basic Information

Item Value
RNA id TU584334
length 508
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G515123
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48265170 ~ 48266108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGCCTACAACAATAAGCTACTCATCATGTCAGATGACAGCAAGGTATGGTTCATTTGCCTATTTTGAGTTTAGAGGAGAAATTACTAACAATATAGTAGGTCACTAACACAGCAATAGGTCTCACTGGTTTGATCCATGGCCTGAAATCTGACCACTATTGCCGTTTTGTTTAAAATAGGAGCGAATAAGTTGTTTCATAAAGTCACAACCTAGGACTGATATTGACCTCTTATTTATTCACCAGAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAAGTTGTGGAGAACATGAAGGATGAAACAGAGACACATGAGACCAACaagaacaggacaggaggcaagagtcttctcagacacccgggtgtggtttccgggaaaggggatctatcattgagcagctggagaaggaggctcagaggactctaatgccttctctcaagattgggacatgctgtgccccaatcctcctctccttcctgaggagtctaactgatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584306 lncRNA downstream 268104 47996809 ~ 47997066 (-) True G515104
TU584305 lncRNA downstream 270363 47994489 ~ 47994807 (-) True G515103
TU584301 lncRNA downstream 277814 47987134 ~ 47987356 (-) True G515099
TU584281 lncRNA downstream 280165 47943033 ~ 47985005 (-) True LOC110511762
TU584266 lncRNA downstream 322170 47942749 ~ 47943000 (-) True G515067
TU584339 lncRNA upstream 24061 48290169 ~ 48290686 (-) True G515128
TU584353 lncRNA upstream 54945 48321053 ~ 48321460 (-) True G515141
TU584356 lncRNA upstream 58444 48324552 ~ 48324889 (-) True G515144
TU584357 lncRNA upstream 59353 48325461 ~ 48326114 (-) True G515145
TU584764 lncRNA upstream 147194 48413302 ~ 48420975 (-) True G515507
XM_036981756.1 mRNA downstream 247316 48016304 ~ 48017854 (-) True LOC118965031
XR_005052133.1 mRNA downstream 279519 47975960 ~ 47985651 (-) False LOC110511762
XM_036980289.1 mRNA downstream 289522 47948315 ~ 47975648 (-) False LOC110513487
XM_036980288.1 mRNA downstream 289522 47971486 ~ 47975648 (-) True LOC110513487
XR_005052134.1 mRNA downstream 330853 47933538 ~ 47934317 (-) True LOC118964890
XM_036980314.1 mRNA upstream 31409 48297517 ~ 48318495 (-) False LOC110512142
XM_036981757.1 mRNA upstream 80756 48346864 ~ 48348019 (-) True LOC118965032
XR_005052141.1 mRNA upstream 82601 48348709 ~ 48353264 (-) True LOC118964894
XM_036980319.1 mRNA upstream 112277 48378385 ~ 48381337 (-) False LOC118964892
XM_036980316.1 mRNA upstream 112277 48378385 ~ 48385590 (-) False LOC118964892
TU584332 other downstream 193 48263993 ~ 48264977 (-) True G515122
TU584295 other downstream 288195 47974793 ~ 47976975 (-) True G515094
TU583955 other downstream 1248674 47016162 ~ 47016496 (-) True G514777
TU583552 other downstream 1354220 46910658 ~ 46910950 (-) True G514434
TU583053 other downstream 1834810 46370690 ~ 46430360 (-) True LOC110526044
TU584340 other upstream 26738 48292846 ~ 48297527 (-) False LOC110512142
TU584341 other upstream 26738 48292846 ~ 48293454 (-) False LOC110512142
TU584348 other upstream 51540 48317648 ~ 48318407 (-) True LOC110512142
TU584351 other upstream 53639 48319747 ~ 48320588 (-) True G515139
TU584725 other upstream 109838 48375946 ~ 48380306 (-) True LOC118964892

Expression Profile