RNA id: TCONS_00032744


Basic Information

Item Value
RNA id TCONS_00032744
length 4158
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_016682
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38197820 ~ 38225472 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGCTACAGAACGAGTGAAGGGAATCAAGATGGCGGACCTCGAAGATGTTACGCTGGACGGGAGGCCGCTGCATTCGCTCCGGGTAGCGGACTTGAAGGCTGCATTGGAAGAGCGAGGGCTTCCGAAGAGCGGACAGAAAAATGCCCTCGTCAAGAGACTCAAAGGGGCTCTCATGCTGGAGAACCTTCAGAAAACCTCCACTCCACACATTGGCCTGCAGCCCAACTCCCGGatCGGGGAGGAAATGAGTCAGAATAGCTTCATTAAGCAGTACCTGGCCAAACAGCAAGAGCTTCTGAGACAGCGTTTGGAAAAAGAGGCACGAGAGGCAGCTGAAACTGATGGAACCGACCGTGGCGACCACACAGAGTCCAATGATAATATCCATGCTGCCTCGAACCAGGATGTTGCTTCTTCCTTAGTCGATCAGAACCAGGGAAGTGCAGCAGTTGCTGGGGGATTTGGGGTCACAGAAAgcgaaagtgaaaaagaaatgcCTGGACAACCGTCCCTTTCTACAGCTGCCCATTCCCGTCCAAGAGCTTCATCTGTGCGGCTTCGTGGTAAAGGAGAGCCGACTTCAAGTCATGTACCAGCAGAAAGTGATGATGACAGTGAAGCTGgggatgatgaggaggaggaggagtggaACGCCAGACCTCAACGGAGTCGTCGAGCACAGCCGCCAAAAAGTCAACCGGTGAGGACAAGATCCAGTGGCTCgcagcaacagcagcagccaCCCCCCCAACACATACCTTTACTGTCACAGCAGCTCAGACATCCAACTCCTCCCCCATCCCCTCCTCCTGAACTTTCTTTCCCACTCCCAGACACCCCTAAACAGAGTCCTCCTAGTCCTGGAGAGTCCCCGTCTAGGCAGCGTATATCTAGCTCTTCGAGTTCTGGTAGTTCCAGTAGTGACAGTCGTAGCAGTAGTCCTGAACCAGCAAGTGACACCACAGAACGCAGACCAGGTCCGTTAACCTTACTGGCACGCAAGATGGCATCTGAGAGGGCTTGTTCTGGAGCAGGAAAGCGTGATAGGGAAGGAGTGGATTTACAAAGAAGCCACCAAGAGGGAGTTGTATCCGCAATTACACACACAGCCAATGCAGCATCAGTTCTCTCACACCCTAGTTCAGTCATCTCCAACCAAGGTGTTAGTGTCGTTAGAGCCGCTGTGATGGAAGCGAGCGATGGCATAAAGCAGGATGAAGGTGTTTTATGGGAGCAAGAACAAGAGAGGCTGAAAGCCCtagagaaagaggaggaggaaaGGGAGAAGGCATTGGAAAAGGAGCGAGCACAAGCTTTGGAACGGAAAAGACTTGAAGCTGCTTCGAAACGTGAGAAGGAGAGGGCTTTACAGCGAGAAAGGGAAGAGAAGGAGAGACTGGAGAGGGAACAAGctttagaaagagagagagcattaGAGCAAGAACGACTCGAACGAGAGAGGCAAGAAAAAGAGAGGGTGGAGAAGGAAAGACAAGAAAAAGAGCAAGCTTTAGAGAGGGAGAGACTCAAGCAGGAAAGACTTGAGAAAGAAAGACAAGAACGAGAAGAAGCTCTAGAGAGGGAGAGATTAGAAAGAGAACGGCTTGAAAAGGAAAGACAAGAACGAGAAGAAGCTCTAGAAAAGGAGAGATTGGAGAGAGAGCGGCTTGAGAAGGAAAGAAGAGAAAAAGAAGCTGCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCttgagaaggaaaaaaaagaaaaagaagctgCTCTAGAAAGGGAGAGATTGGAAAAAGAGCGTATTGAgaaggaaaaaagagaaaaagaagaagCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAgaaggaaaaaagagaaaaagaggaaGCTCAAGAGAGGGAGAGATTGAAGAAAGAGCGtcttgagaaagaaaaaaaagaagctctTGAGAAAGAGCGCCTTGAGAAGGAAAGACAAGAAAAAGAAGCTGTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAgaaggaaaaaagagaaaaagaagctGCTCTAGAAAGGGAGAGATTGGAAAAAGAGCGTATTGAgaaggaaaaaagagaaaaagaagaagCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTGGAgaaggaaaaaagagaaaaagaagaagCTCTAGAGAGGGAGAGATTGGAGAAAGAGCGTCTTGAGAAGGAAAGACAAGAAAAAGAAGTTCTAGAAAGGGAGAGATTGGAGAAGGAGCGCCTTGAGAAGGAAAGAAAAGAACAAGAAGAAGCTCTAGAGAGGGAGAGATTGGAAAAAGAGAAGCTTGAGAAGGAAAAACAAGAACAAGCTCTAGAAAGGGAAAGACTGGAGAAAGAGCGtcttgagaaagaaagaaaagaacaaGAAAAAGCTCTAGAGCGAGAGAGATTGGAAAAGGAAAAGCTTGAGAAGGAAAAACAAGAACAAGCTCTAGAAAGGGAAAGACTGGAGAAAGAGCGTCTCGAAAAGGAAAGAAAAGAGCAAGAAACTCTAGAGAGAGAGAAATTGGAAAAGCTTGAGAAGGAAAAACAAGAACGAGAACAAGCCCTAGAGAGGGAAAGATTGGAGAAAGAGCATattgaaaaggaaaaaagagaaaaagaagctCTAGAAAGGGAGAGATTGGAGAAAGAGCGTCTTGAGAAGGAAAGAAATGAACGAGAACAAGCCATAGAAAGAGAAAGGCAGGAGAAAGAAGAGCGAGAAAGAGAGGAAACTTTAGAAAAGGAGCGAAAAGAACAGGAAAGGCTGGAGAAAGAGAGGGctttagaaaaagaaagagaagctGCTCTGGAACTTAAAAAACAGGAGCAAGAAAGACTTGAGAAGGAAAAAGCTTTGGAAGAAGAACGCCTGCAGAAAGAACAAGCTCTTCAGcatgagagagaggcagagaggaAAAAAGAGGAGGAGCGAAAGCAAGCATTGGAAAAACAGAAAGAGGAGCAGGAGAGAGCTTTAAAAGAGGAGAAAAGGGAAAAACTTTTGAAGCAAAAAAGTGTGGAAGAGGAAAAAGGAAAGGCATTGAAACATGAAAAAGAGGAGGAAAAAGAAAGCCATCTTCATCCACGGAAGTGTGGCCGTGATAGTGGTGAGTTTTCCCATCCAGTGGTCCATCCTGGTTCTCCCAAGAGTTCACCTAAGAAGTCAGATGAGAGTGAGCCTGGAGAAAATCCAAGCATCAGCAAAGATGTTCAGTCATCAGAGCCTGTCCCACAACAGTCACCCACACTTGCAACACCACTGTCCCATCAATCTTCCTCCAAGAAGTCTCGTTTCCTTAGAGATGCTCCTGTGATGGCTCCTCTCCCGTCTTCTGTGGGTTCTGTGCTAAAGAGACCTCGCACTTTTTCAGACAGCCCGCAGCCACGTGCCCCCTCAATTCCAACAGATTCTAAATCTAAAGAACCAGTGCAAGAAGATGCTGCTCAGGCACCTCAAACATCAGTCTTGACTTCAGGACCCCATGACCTTGAAAGAAAGACTCCTGAGGTGGCTGTCAAACAAAGTGTACCACAAGAAAATATTCAGACGTCAGAGGACAGCGAAGCAAGCAAAGACACTAAACATAAAACGCTCACAGGAGTTGAGGATGTGAAGAAATCTTCAACGCCagaagaagagaagaaaagaggACGGGCAAGGGAAAAGAAGgttgagaaaaaagaaagaaagtcatcaTCCTCCAGTAATACCTCCTCATCTGACTCGGATTCTGGATCCTCATCCTCACGCTCCTCCAGTtcttcgtcatcatcatcatcatcatcttcatcagagGAGGAAAAAAGCTGTTCCGCATCAGGTGGTAGGAGGTCTGAAGAGGTCAAAAGGGATTCTTCATCTCAGCCAACAGAAAAAGTTtgtcaaactgtggctgaaaagcCTCCTGCACCTCAGCGCAAAAAACGAGTCTTTACAGAGAAAGAGGAGAAAGATGTGAACAACGAAGTCATCCAAAACAAGAAACCTTGTCTTGACCTACAGGATGGAAAGGAGACAAAGGAGGATATTGAGGAAGATGCTGACACTAACAAAGACACTACCAGAAGTGAGGTGAAGGAGGCTGTCATGTCAGAGCCTGAGAAGGTTTCAGAAAGTGGCGAGGAG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-583 Predicted to enable nucleic acid binding activity. Orthologous to human ACIN1 (apoptotic chromatin condensation inducer 1).

Ensembl:

ensembl_id ENSDART00000146485

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033892 lncRNA downstream 10254 38192959 ~ 38194479 (-) True XLOC_016681
TCONS_00033891 lncRNA downstream 59032 38144162 ~ 38145701 (-) True XLOC_016680
TCONS_00032737 lncRNA downstream 62756 38138350 ~ 38141977 (-) True XLOC_016679
TCONS_00033384 lncRNA downstream 389360 37813663 ~ 37815373 (-) True XLOC_016662
TCONS_00033385 lncRNA downstream 389429 37813663 ~ 37815304 (-) False XLOC_016662
TCONS_00032760 lncRNA upstream 772660 38998048 ~ 38998761 (-) False XLOC_016690
TCONS_00032761 lncRNA upstream 787532 39012920 ~ 39015104 (-) True XLOC_016690
TCONS_00032767 lncRNA upstream 856908 39082296 ~ 39086574 (-) False XLOC_016693
TCONS_00033386 lncRNA upstream 1384933 39610321 ~ 39612464 (-) True XLOC_016697
TCONS_00032775 lncRNA upstream 1509181 39734569 ~ 39737898 (-) False XLOC_016698
TCONS_00032736 mRNA downstream 62736 38134924 ~ 38141997 (-) False XLOC_016679
TCONS_00032735 mRNA downstream 73385 38127986 ~ 38131348 (-) True XLOC_016678
TCONS_00032734 mRNA downstream 79076 38121415 ~ 38125657 (-) True XLOC_016677
TCONS_00032732 mRNA downstream 87195 38087413 ~ 38117538 (-) False XLOC_016676
TCONS_00032746 mRNA upstream 6307 38231695 ~ 38261272 (-) False XLOC_016683
TCONS_00032747 mRNA upstream 28707 38254095 ~ 38256589 (-) True XLOC_016683
TCONS_00032748 mRNA upstream 51887 38277275 ~ 38282079 (-) True XLOC_016684
TCONS_00032749 mRNA upstream 57259 38282647 ~ 38284648 (-) False XLOC_016685
TCONS_00032750 mRNA upstream 57259 38282647 ~ 38284749 (-) True XLOC_016685
TCONS_00032691 other downstream 795576 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032658 other downstream 1530814 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 1533575 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 1872402 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032642 other downstream 1876622 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032764 other upstream 837366 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 1145423 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 1510164 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032777 other upstream 1701573 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other upstream 1783350 40008738 ~ 40026622 (-) True XLOC_016700

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_16079875_16086958.mRNA True 2500 mRNA 0.52 6 CI01000004 16079875 ~ 16087211 (-)