RNA id: TCONS_00034080


Basic Information

Item Value
RNA id TCONS_00034080
length 552
RNA type mRNA
GC content 0.56
exon number 5
gene id XLOC_017068
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1316495 ~ 1327859 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACTGCATCAGCGCGAAGTACATCTCCCAGAAGATCAGCAAGACGCGCTGGCGGCCGGTGTCCGCGGCGTCCCTGCAGCAGCCCGAGGTGTTCGCCACCGGCTCCTGGGACAACGAGAATAACAAAGTGTCCATCTGGTCAGTGGGAGACCGCGGGGGCTCAACCCTGGATGGAGACCTGGATGAGGAGCCTCAGTTACTATGCGACTCTCAGCATGAGGGAGATGTGATGGACCTGCAGTTTCTAGATCAAGACCGGCTTGTTTCTGCATCTTCCAGCGGGGCCGTGAGCATCTTTAAGCTGCAGTCGGACTGCCAGGCTCTGTCATTGGCTCACGTGTGGGAGAGAGCTCATCGGTGTTCCTGTGATAATGCACCGTGCACAGCCATAGTGTGCAGAAGTCCTGAAATAGTGTCCGTGGGTGAGGACGGGCGAGTTATTCTTTACAAGGCGGATCAGGCGGAGGTCACGCGCGTTATTGGGAACACCACAGTGGTTTTGGATTTGAAGGTTTGTtgttgtgggaagaagaagacggGGTTGACGATAAG

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0031080 nuclear pore outer ring cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2533 Acts upstream of or within heart development. Predicted to be part of nuclear pore outer ring. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human NUP43 (nucleoporin 43).

Ensembl:

ensembl_id ENSDART00000152586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036537 lncRNA upstream 112929 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00036536 lncRNA upstream 113001 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00036535 lncRNA upstream 113200 1200292 ~ 1203603 (+) False XLOC_017065
TCONS_00034075 lncRNA upstream 114621 1200366 ~ 1202182 (+) True XLOC_017065
TCONS_00036534 lncRNA upstream 416423 896905 ~ 900380 (+) True XLOC_017061
TCONS_00036538 lncRNA downstream 31608 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00036360 lncRNA downstream 340704 1663759 ~ 1725048 (+) True XLOC_017074
TCONS_00036361 lncRNA downstream 838027 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036362 lncRNA downstream 890634 2213689 ~ 2214421 (+) True XLOC_017082
TCONS_00034099 lncRNA downstream 938878 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00034078 mRNA upstream 29004 1278184 ~ 1287799 (+) True XLOC_017067
TCONS_00034076 mRNA upstream 40628 1272526 ~ 1276175 (+) False XLOC_017066
TCONS_00034077 mRNA upstream 40645 1272535 ~ 1276158 (+) True XLOC_017066
TCONS_00034074 mRNA upstream 117794 1196386 ~ 1199009 (+) True XLOC_017064
TCONS_00034073 mRNA upstream 191408 1121458 ~ 1125395 (+) True XLOC_017063
TCONS_00034082 mRNA downstream 6454 1329509 ~ 1350296 (+) False XLOC_017069
TCONS_00034083 mRNA downstream 6573 1329628 ~ 1338985 (+) False XLOC_017069
TCONS_00034084 mRNA downstream 25988 1349043 ~ 1350162 (+) True XLOC_017069
TCONS_00034085 mRNA downstream 62619 1385674 ~ 1393020 (+) False XLOC_017071
TCONS_00034087 mRNA downstream 75509 1398564 ~ 1406308 (+) True XLOC_017072
TCONS_00034041 other upstream 998698 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034086 other downstream 62694 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034116 other downstream 1585496 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 3751869 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 3783513 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 4100907 5423962 ~ 5424096 (+) True XLOC_017119

Expression Profile

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