RNA id: TCONS_00034144


Basic Information

Item Value
RNA id TCONS_00034144
length 1976
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_017115
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 5074118 ~ 5094423 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTAATGGCTGCCTCCATGTCGTGAATGTGAGACCGACAACGATTAACGTTTTATTCGTCTCCCCAGTTTACTGAGGACATAAACGTGCCATATATCGCAAAGCCTTTTGCAGTTCAGACTGATTTGCGGTTTGGCATCAGCCGTCACTTCCTTCCAAATGAAGGACGGCAAGGAGAACTCCAACGCCACCTTCGGAAGCTTCACCACAAATCTGGACCACACCAAGCCATGCTGGTACTGGGACAAGAAGGATCTGGCCCACACCCCGTCCCAGTCAGACCTGGACCCAGCCACAGAAGCGCGGTACAGACGAGAGGGAGCCAGGTTCATCTTCGATGTCGGAACACGTTTGGGATTACATTATGACACCCTGGCGACAGGAATAACATACTTTCATCGGTTTTATATGTTTCATTCTTTCAAACAGTTCCCCCGATATGTTACCGGGGCTTGTTGTCTTTTCCTGGCTGGTAAAGTGGAAGAAACTCCCAAGAAGTGTAAAGACATCATTAAAACCGCTCGCAGTCTGCTCAACGATGTGCAGTTTGCACAGTTTGGAGATGACCCAAAGGAGGAGGTCATGGTGTTGGAAAGAATTTTACTGCAGACAATCAAGTTTGATTTGCAAGTTGAACACCCCTATCAGTTTCTGCTGCGCTACGCTAAACAGCTGAAAGGTGACAAGAACAAAGTTCAGAAGCTTGTACAGATGGCGTGGACCTTTGTCAATGACAGCCTCTGCACGATGCTGTCGCTTCAGTGGGAGCCAGAGATCATAGCAGTAGCGGTGATGTACCTTGCTGGCCGGCTTTGCAAGTTTGACATTCAGGAGTGGACTTCTAAGCAGTCGTCTCGCCGCTGGTGGGAGCAGTTTGTCCAGGACGTTCCAGTGGAGCTGCTGGAAGATATCTGCCACCAGATTCTGGATTTGTACTCTCAGGGTAAGCAGCCGATCCCCCAGCAGCCTCCGATGCAGGACAAAGAGAAACCGCCACCCCCCCCCGCTGCTCCTCCCGGCCAATCAGGGGCGCAGAACCCACCCGCTCAACCTCCCTCCAAGAAGAACTCCCCCCAGGCCAGCCCGCCCGCCAAGATCAAACGCCAACATgTCTCTCCTAAAGATGAACCCAAAGCTCCAGCAGAGCAAGTCGGCTCTAAGATACCACGTCTGGAGAGTCCCATGCCGCCTCTTCCTGTTTCTCAACCCCCTgAACGCAAGACTCCATCTGCCATCCCAGCACCTCCTGCAGAAGCCGAGCCAGCTGCGGCATCAGAACTGGACCCAGCACAAGGACCTGCTCCTCCTCTGCCACACGGAGCCCCTCCCCCTCTGCCACACCGCCCACCGCCgactgagtttggaggCCCCTGctctgattttctttcttctgttaaacacaaaagaagatatttagatgatgatagaaacctgtaatcattgacttccatagtatgtatTTCTCCTACTTATTGAAGTCAATGCTTAGCAGTtgagtgaagggtgagtaaatgacagacgttttcagttttgggtgaactatccctttaaatccatTCTTATCACCACTTACATTCCAAATACCTTTCTATGAACGAATTATGAATTCTTCATTGTACATATGGGTTATTCTGTATTATCTTTAGAGTGtgttgcttttttttgtttgttattttcccAGTGTTGTGTTCCTCTGGCTTACTTTTTAGTTAGTTTGTTGCAGACTTCTTCTTATTTCCTTAGCAAGATCGGGAAAACGTCCCACAAATCTTCCTTAGCAGTAGGTAATTCTGATGCCTTTTTGGCATCTTTGACTGACCTGAGATCAGGTGCAATGATTGGGCATGTTGGTTTCATAGTTTCCCGAATGTGCCTTAGTTTGGTTTATAGTTGATCGAGGGACTCTCTGTGCTCAACTAGCTTGTGTTTACCTGTTGATTCTTTTAGGCAGATAATAAAAACTGCGCATTTGCTG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0007417 central nervous system development biological_process
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0008024 cyclin/CDK positive transcription elongation factor complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-5126 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Acts upstream of or within central nervous system development. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Is expressed in central nervous system. Orthologous to human CCNK (cyclin K).

Ensembl:

ensembl_id ENSDART00000104581

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034142 lncRNA upstream 16166 5051189 ~ 5057952 (+) True XLOC_017113
TCONS_00034136 lncRNA upstream 755645 4311851 ~ 4318473 (+) True XLOC_017108
TCONS_00034135 lncRNA upstream 761897 4309521 ~ 4312221 (+) False XLOC_017108
TCONS_00034134 lncRNA upstream 766383 4304457 ~ 4307735 (+) True XLOC_017107
TCONS_00036367 lncRNA upstream 1147198 3925357 ~ 3926920 (+) True XLOC_017100
TCONS_00036542 lncRNA downstream 1118387 6212810 ~ 6214789 (+) True XLOC_017124
TCONS_00034179 lncRNA downstream 2233068 7327491 ~ 7351711 (+) False XLOC_017136
TCONS_00036368 lncRNA downstream 2233204 7327627 ~ 7350653 (+) False XLOC_017136
TCONS_00036543 lncRNA downstream 2439293 7533716 ~ 7540142 (+) True XLOC_017139
TCONS_00036369 lncRNA downstream 2807533 7901956 ~ 7902288 (+) True XLOC_017142
TCONS_00034143 mRNA upstream 3794 5065268 ~ 5070324 (+) True XLOC_017114
TCONS_00034141 mRNA upstream 177763 4885298 ~ 4896355 (+) True XLOC_017112
TCONS_00034139 mRNA upstream 260020 4793516 ~ 4814098 (+) False XLOC_017111
TCONS_00034140 mRNA upstream 260317 4793790 ~ 4813801 (+) True XLOC_017111
TCONS_00034138 mRNA upstream 619324 4392687 ~ 4454794 (+) True XLOC_017110
TCONS_00034148 mRNA downstream 12145 5106568 ~ 5120937 (+) True XLOC_017117
TCONS_00034149 mRNA downstream 37715 5132138 ~ 5138768 (+) False XLOC_017118
TCONS_00034150 mRNA downstream 37785 5132208 ~ 5145333 (+) True XLOC_017118
TCONS_00034152 mRNA downstream 468619 5563042 ~ 5700369 (+) False XLOC_017120
TCONS_00034153 mRNA downstream 469619 5564042 ~ 5957633 (+) False XLOC_017120
TCONS_00034116 other upstream 2165453 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034086 other upstream 3681463 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034041 other upstream 4756013 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034147 other downstream 12145 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 329539 5423962 ~ 5424096 (+) True XLOC_017119
TCONS_00034155 other downstream 579607 5674030 ~ 5697001 (+) True XLOC_017120
TCONS_00034160 other downstream 1240873 6335296 ~ 6335411 (+) True XLOC_017125
TCONS_00034173 other downstream 1825325 6919748 ~ 6919864 (+) True XLOC_017131

Expression Profile

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