RNA id: TCONS_00034784


Basic Information

Item Value
RNA id TCONS_00034784
length 5926
RNA type mRNA
GC content 0.54
exon number 22
gene id XLOC_017503
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36682051 ~ 36792710 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCTTCTGAGTGACGTGAGCGATCCTCCTGTTTGTTTGTGTAGCTCGAGGATGAAAATGGCGGTGGCGAGAGATCAACGCGAGAATTAAACACACAAATGACCATTTGACGTGGATGACAGCGGCACTGCAGCTCCGCGAGCGACTAAAGAAGCGTCTCATCGTCACGCGAGTGCATTCACGACAGCAAACACCCGGAGTTTAACGAGAAGAAACTGCGTCCTGGATTTAAAATAGCTGCTGAAATTAGCCCGCTAACCTCGTTAGCTTAGCTAGCCTTCAACCGAAGGGTTTAACGGACACCACAGCACAACACTAACGGAATTATTCTGCCAGAATAAGATGAACTGCGCATTTCTCGACTTACCTCTCATATGCAAGCTCAGCCGCTGGCGCTGGGCTTGCAGAAATGTTTGCATCTGACTGAATGCATAACTAATCGCTCCATCTGGCTGTATTAGCCAGCAAACAACATCCAGCATTCTCAAAGTTCACAGAGCATCTGTAAGAGGAGATCGGACTAAACAGGTTGGATTGAGCGCCCTTTACCTTCCTCCCTCCCCTAGTGGGATGGTTCTGCATGACAGGGAGGGTATGGTTCTCTAACCTCCCTCTCTGTCCTCCAGGTCCCATCCTGTAAACCCAGTAGACCACAGCCATAGTGATCTCCTCAATGAACATCCTTCAAGAGCTCTAGATCAATTGCCATTGGTCATCCATTTAGTGCTGCCTCCCCCCGGTGGGATGGTTCTGCATAACAGGGAGGGTGTGGCGCCGTAGCCCCCTCTCTTTGACATCTCTCCCGCCTCATAAACCCAGTGGACCACAGCCATAGTGTCCCCTTCAATGAACATCCCTTTGGAGCCCTAGACAAAGTGCGCAAATGCTCAAAATGAGTGCCGCCGGGGAGAATGCACTCGACCCCAACATCTTAGAGTCACGGAAGAGGAAGGGCTCTCCATGTGATACCTCTGGTCCCAGTGTGGAGAAGCGGCGGCGGGAGCTGGAGTGCCGCTACATTGATGAACTGGCTGAGTTACTGTCGGCCAACATGAGCGACATTGCCAGCTTGAACGTGAAGCCGGACAAATGCCACATCTTAAAAAGCACCGTGGACCAGATCCAGCAGATCAAACGGCGCGAGCAGGAAAATGCAGCTCTGATGTCTCCAAATGATGAGGTGCAGCAGAGTGACATATCGTCCAGCAGTCATGGCATGGTGGAAAAGGAAGCTCTTGGGCCTCTTCTCTTAGAGGCCCTGGATGGCTTCTTTTTCGTCGTGAACCGTGAGGGCCGCATTGTGTTTGTCTCTGAGAACGTCACCGGTTATCTGGGTTATACCCAGGAAGAGTTGATGACCTCCAGCGTCTACAGCATCCTTCATGTGGGAGATCACAACGAGTTTGTGCGCATTCTGCTGCCCAAGAGCCTTGtaaATGGTGTGCCATGGTCTCAGGAGCAAGGCCGGAGGAACAGCCACACGTTTAACTGCAGGTTGCTGAAAAGGCCTCCAGACGAGGTGGACTCAGAGAACCAGGAGGCCCGACAACAGTATGAGCTCATGCAGTGCTTCACAGTCTCTCAGCCCAAAGCGCTGCAGGAAGAGGGCGAAGACCTGCAGAGCTGTTTGATCTGTATAGCATGTCAAATACCCCGTCCACCTCAAATCCCTGTTAGTACAGAGTCCTTCATCACCAAGCAGGACCCTACAGggAAAATCATCTCTATTGAGACGAGTGCTCTGAGGGCCACAGGCCGACCAGGTTGGGAGGATCTGGTCAGGAAGTGCATCTATGCTTTCTTCCAGCCTCAGGGCAATGAGCCCTCCCATGCCAAGAAGCTGCTTCATGAGGTGATGACCCACGGCATGGCCATCAGTCCTCTCTACCATTTCACACTCAGTGACGGGACGTCCCTCAGTGCGCAGACGCGCTGCAAATTCTGCTGCCCCCAAAACCCAGACGTACAGCCCTTCATCATGGGCTTTCACACTATAGACAGGGAACACAACACTGCTAGCTCTCAGGAAAACACTACCCCCAGCCTTTCGTCTCCTGCTGCTCCCCCTTCCCGCTCGCCTGCCCTGCAACCCTCCAGTGACCTCAGCATCCATCTCAACAACACCAACGGCACCTGTGCCACTCCCGGCCCCCTCACGCCCACTCCACCAGGCTACCTGACGCCCAGCCGCGTCGGGCCGTCACAGCAGGTCAGCAGCCCCTCTCCACTAGGCAGCCCTCTTACAGCAACCCCTACCTCATTCATGTCGCCCCGACCTCCACGGGGCAGCCCGGGCCTGGCCAGCAGCCCACGAGTGCCCGGACATCCATTCTCCCCCTCAACGCCCAGCATCCACTCGCCAGCTGGTGGACTAACCAGGCAGCAATCTGGCGGCGATGGTGTTGGTTTCTCGCTCCCTTCTCCTTTGCCCCCCAGACAGACTCCAACTCCCAGCAGCTCGCCGGCAAGGCAGCCTCCTGCCAAACCGCCAGAAGCATCCAACGATGAGCCTAAAAGCAATCAAGTCGGCAACCCCAAGCTCAGCCAGCTTTTAGATGGCGCAAGCGCCCCCGAACAAGACTCACAACCCCGTCCTTCACCCACGTCCCAATGCCCGGCCTCGCACAGCAGCCTGACAGAGCGGCATAAGATTCTGCATCGGCTGCTTCAGGACAATAGCCCTGCAGATGCGGGCAAGGAGCCGGATATTAAGAAGGAGCCCCCGACCAGTCCCAACTCAGCCTTGATAGCACGGGGACTCGGGAAGGAGCCCCAGGACCACCAGCTGCTACGTTTCCTGCTGGATACGGATGAAAAAGACCTGGAGGACTTGCCACCTCCGGCCACCCTCAGCCTTCAGACGGTAAAGGTGAAAGCTGAGAAGAAAGGAAGCAGAGAGAATGTGTCCTGTGCTGCTGCTTTGGCCAACAATGCCATGCCTGGCTCACCTCAATCCAGTGGCAAGGCCAGCCCGCAGTTTCCCAGTACCGATCTGGACACTTTAAACCAGCTCTTGCCCACTCTGAGAGCCTCTGTTGGAGGTAAAACAGTAGAGGAACCCAGTGAGGACAGCCTTTCCATCGGGGTCAATGTGAAGAGAGAGTCACCTGGAACATCAAGCCAAGCATTCCCTGATGGAGAAAACCTCTCAAGTCAGACCTCTTTTGACTTTTGTGACCCATCCACACCAAACCAGGGTCAGAGTCAAGTCCAGGTGTCGGATCTTGGCCAGACAGAGCTGTTTCAGCCACCTAAGGAGAGCAGCAGCCCCTTTGCCAGTCCAACAAGCCACAACTCTTTTAACACTAACACAGGTCTGGCCAAACTGGAGCTTCCAGATTCTCAGCAGTTCCAGGCTTTGCCTCTGGTTGAACCAATGACCTTTGATAACAGTTTGGCCAACCAGACACAGGCCCCTCTGTCCTCTCCTCAAGAGCAGTGTGTCCCGTGTCCGCTGGATGAGATGCTGTGTCCTCCCACCACCCCAGAGGGACGAAACGACGAGAAGGCCCTGCTGGAGCAACTGGTCACTTTCTTGAGCCACACTGACGAGAGCGAGCTGGCAGAGCTGGACCGAGCGCTGGGCATCGATAAGATTGTTCAAAGTGGATGCCTTGAACCAGTCACCCAGACCCCCTTTCCTCAATCTCAGCCCCCAACACCTGTACCCTTGGACCCCAAACTGCCCAGCTACCCCTCTCAGTTCCCCACCTCgccctcacagtttcctgctgagATGGCCACCGCACAGGGCATGAGCTTTGGGGCCCCACGGATGCCGTTTCCAGGCAACGTGGTGCAGGCCGGCATGAACCGAGCTCCCGGTGTGTCCAACCAGCTCCGGCTACCTCCAAACCAGCTGAGACTCCAGCTCCAGCAACGCCTGCAAGGGCCACAGCAGCTCCAGAACAGGCTGGCAGCCATGGGCTCCTTCCCCCAGGGGGGGCATGTTGCCATGGGGATGCGTCAGAGCATTCAGCAGCCTCAGATGCCCTCTCAGCCTCCGCTGAATGCTCAAATGATGGCCCAGCGGCAGCGTGAGGTCTACAGTTACCAGCACCGCCAGCGGCAGCTTCTGCAGCAAAAGGTCATGCTAATGAGGCAGGGAATAAACACAGGGCCCCTGGGGGCTCAGAGACTTCCTAAGGGcccccagcagcagcagcagccgccaccgcagcagcagcagcaatttGGCTTTCCTCCAGGATACAACGCTGTGCCTGGAAACACCCCTACCTCCCCGAGCCACTTTAACCCCATGGGAGGACCTCTGGACCCAAAGCTGTCCGTCAGGGCAGGCCTGGGGAACCAAGGCATTATGGGAGCCATTCAAGGGCAGTTTGGGGGGCCTGTGAACACTCCTGTTCAACAGGGGCTTTTCCAGCAATTTGGGGGGTCTGGCATGATTCAGCAAGCAGATCCATCGTTTGCTCCTGAGCTCAGCCCCACCAGCCCCCTGCTCTCACCTCAGAACTCCACCTCCCAGAGTCCTCTGCTCCAGCAGACACAGCCTCCGCCTGGTTACCAGTCACCTGACCTCAAGACCTGGCAGCAGGGAACTGTGGCAAACAACGGTATGTACAACCAGGTGGGTCCGCCAGTCTCTCAGAGCTTTGGGCAGCAGGGCGTTTATAACAACATGAGCATCACCGTGTCAATGGCCGGAGGCTCTGGAGCAGTGAACACTCTACCTCCTATTGGTCCATCCGTCGGCATGGGCAACAATAACCTTGGCAACGTCACCACAATGTGTAATGAGCAGGTACAGCAGGTTCAGGTGTTCGCTGATGTCCAGTGCACGGTAAACCTAGTGGGCAGTGACTCCTACCTTAACCAGTCGGGGCCTATCGGATCCCAAAAGGGCCCGAGCGGAACCCCCAGTGCCCAGTCCCAGCAGAAAAGCCTCCTCCAACAGCTCCTGACCGAGTGAGAGCCGCCACCATCCACCAGAGGGACAGTCAGTCTCCACATGTAGAGATTTTTATCCTTCACCTTTGGTTTCTATACAGTATATCTGCAGGGTCGGTGTCTGGGGCCCAGGCTTGAGAGGTTTCATAGCTGTTCGACAAAGTGCTCATTCCTGGTCACCTTATAAAGCGTCAGTTTCCGGAAAAGGAGAAACAAAAAGAGATCACGTTCCAGAATTTGCCAAGTctgtataaaaacaaacaaaaaaagagtaATTAAAAACACGGACCTGCTGCTTCAGCCGGCTACACGTCCTGTCGGTCAGGCCAACGTTGCAGTGCTTCTTGGAGAGCGGCGCAGCAGCTGAGCTCGGATTGGAAACTAGGGCGGGCCGTTGCCATGCTGTTGCTAAGTTCATGGAATATTGTTCAGTTTCAGCTGGATCTGTGACTGATAGGCTCTCCTCAGCAGTGCCTGATGATGGGAGGAATTTCCCGCCTCTTTTTATTTGTTAGTCTGTTCTGTTTGTTGTCGTTCTCTTTGTTTTTCGTTTGtctgttttcagaacaagcatGGCCAGGATGGGAGACTGCTCTGTAGTGCGTATCCGTCTGCTGCAGGCTTTCCTGGCAACACTGTTTTGAAACGGCAGAcgttttttttttggggtttgttttgtttttatttgttttgaaacaATGTCCAACACATTTCCCCCCTCAGCAGCTGTGAATACGAGCCACTTAGGGTCAACTCAGCCTATCAGTGTTTTTAGCGGCGACGTGTTGTGCAGGTTGGTATTATTGTACAGCACAAAACGGACAAAGTTGGGACAAGCTCACACTTTGTAATTTCCTTTAACACCAAACATCATCAAATCctcttgttttagttttttttttttttcggacgCATCAACGTAACATCTTTTCTAATGGCTTTGTGAATcactttttgttatttaaaacaaacaaacaaacaaacaaaaaaaatcatccaTCAGAATTTCGCACgc

Function

GO:

id name namespace
GO:0032870 cellular response to hormone stimulus biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0035257 nuclear hormone receptor binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0016922 nuclear receptor binding molecular_function

KEGG:

id description
ko04915 Estrogen signaling pathway
ko04919 Thyroid hormone signaling pathway
ko05200 Pathways in cancer
ko05224 Breast cancer
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041001-175 Predicted to enable nuclear receptor binding activity and nuclear receptor coactivator activity. Predicted to be involved in cellular response to hormone stimulus and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in axis; central nervous system; intestinal bulb; liver; and presumptive diencephalon. Orthologous to human NCOA1 (nuclear receptor coactivator 1).

Ensembl:

ensembl_id ENSDART00000130513

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036399 lncRNA upstream 377945 36302797 ~ 36304106 (+) True XLOC_017500
TCONS_00036627 lncRNA upstream 727810 35857399 ~ 35954241 (+) False XLOC_017496
TCONS_00036398 lncRNA upstream 854846 35712858 ~ 35827205 (+) False XLOC_017495
TCONS_00036630 lncRNA downstream 52404 36845114 ~ 36851296 (+) True XLOC_017508
TCONS_00036402 lncRNA downstream 68027 36860737 ~ 36872734 (+) False XLOC_017509
TCONS_00034791 lncRNA downstream 68027 36860737 ~ 36872734 (+) False XLOC_017509
TCONS_00036631 lncRNA downstream 68027 36860737 ~ 36873125 (+) False XLOC_017509
TCONS_00036632 lncRNA downstream 68058 36860768 ~ 36880386 (+) False XLOC_017509
TCONS_00034782 mRNA upstream 43872 36628059 ~ 36638179 (+) False XLOC_017502
TCONS_00034783 mRNA upstream 44548 36629173 ~ 36637503 (+) True XLOC_017502
TCONS_00034780 mRNA upstream 55482 36623807 ~ 36626569 (+) False XLOC_017501
TCONS_00034781 mRNA upstream 55518 36623891 ~ 36626533 (+) True XLOC_017501
TCONS_00034776 mRNA upstream 383911 36233873 ~ 36298140 (+) False XLOC_017498
TCONS_00034786 mRNA downstream 13688 36806398 ~ 36816964 (+) False XLOC_017506
TCONS_00034787 mRNA downstream 19658 36812368 ~ 36818195 (+) False XLOC_017506
TCONS_00034788 mRNA downstream 21849 36814559 ~ 36817553 (+) True XLOC_017506
TCONS_00034789 mRNA downstream 28255 36820965 ~ 36839074 (+) False XLOC_017507
TCONS_00034790 mRNA downstream 28295 36821005 ~ 36839047 (+) True XLOC_017507
TCONS_00034779 other upstream 401887 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 1259224 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 1299434 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 1393080 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034743 other upstream 1618070 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034815 other downstream 1028280 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034825 other downstream 1321087 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 1827956 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 1828024 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 1982262 38774972 ~ 38775087 (+) True XLOC_017538

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_00718512_00738422.mRNA True 5408 mRNA 0.52 21 CI01000029 717495 ~ 738592 (+)