RNA id: TCONS_00036635


Basic Information

Item Value
RNA id TCONS_00036635
length 714
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_017510
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36925790 ~ 37207373 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaacaaaatgcttgtGCTTTGTTTGGAGAAGAATCAAAGAATCAAAACAGGCGAATCAATCAATTAAACGAATCACTTGCTTGAGTCGGTTCTTTTTAGTGATTCGGTAGAATGATCTGAATCGCTTGGTAATTTAATTCGAATCATTTCACAGGCCACGTGATAAATCGTTGGAGTGGCATTTCCGTTTGTACAGTGAAGAAATGAGttacaagtaataaataaaaGCGACTTTTGTTAGATTTCTTTTAACCTACAATCTACTGAAATTAAACCCGTTGTTATCCTGCGACGGAGAGCGAAATGAACACCCGACGGTGCATCTTGTGAACAACTTTGAAGAAGATTTTCTCTACTAAAATGGCTGTGGTCAGCTCAGGGTCACTTCAGGATGGGATAAGGTCGAAGGTTAATTTGCTGTAAGGACTTTCCATTTCCTACTACAAATATGAACACTGGTGTGATGAACTTTAAGTCGTGTTGGAGATGGTATTCATTCTTAAAAATGGAACTGCAGTACAACCTCTTCCTTCTCCCTAAGGGTACATGACTGGACgaaaaaaatatattctgaatTCAGCTCAAAAATTTCACCACAGGGCTCATCACTATGTAAAAGTATGCTGTTTGTGTGACGTGTTTTCTCAATGATACACAGACAATCTGTTCTATTGCACTGTTCTGAAAATAAATGGGTATGTAAAGAGGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036403 lncRNA upstream 14839 36869893 ~ 36910951 (+) False XLOC_017509
TCONS_00036634 lncRNA upstream 14839 36906576 ~ 36910951 (+) True XLOC_017509
TCONS_00036633 lncRNA upstream 45404 36860808 ~ 36880386 (+) False XLOC_017509
TCONS_00034792 lncRNA upstream 53056 36860787 ~ 36872734 (+) False XLOC_017509
TCONS_00034798 lncRNA downstream 297080 37256654 ~ 37280782 (+) True XLOC_017511
TCONS_00034809 lncRNA downstream 535514 37495088 ~ 37578161 (+) False XLOC_017515
TCONS_00036639 lncRNA downstream 535525 37495099 ~ 37578161 (+) False XLOC_017515
TCONS_00034808 lncRNA downstream 535583 37495157 ~ 37605125 (+) False XLOC_017515
TCONS_00036640 lncRNA downstream 615546 37575120 ~ 37578161 (+) True XLOC_017515
TCONS_00034789 mRNA upstream 86716 36820965 ~ 36839074 (+) False XLOC_017507
TCONS_00034790 mRNA upstream 86743 36821005 ~ 36839047 (+) True XLOC_017507
TCONS_00034787 mRNA upstream 107595 36812368 ~ 36818195 (+) False XLOC_017506
TCONS_00034788 mRNA upstream 108237 36814559 ~ 36817553 (+) True XLOC_017506
TCONS_00034786 mRNA upstream 108826 36806398 ~ 36816964 (+) False XLOC_017506
TCONS_00034799 mRNA downstream 334538 37294112 ~ 37297352 (+) False XLOC_017512
TCONS_00034800 mRNA downstream 334617 37294191 ~ 37297158 (+) False XLOC_017512
TCONS_00034801 mRNA downstream 335432 37295006 ~ 37298274 (+) True XLOC_017512
TCONS_00034802 mRNA downstream 340722 37300296 ~ 37379578 (+) False XLOC_017513
TCONS_00034803 mRNA downstream 341125 37300699 ~ 37376660 (+) True XLOC_017513
TCONS_00034779 other upstream 645626 36280048 ~ 36280164 (+) True XLOC_017499
TCONS_00034762 other upstream 1502963 35422698 ~ 35422827 (+) True XLOC_017490
TCONS_00034760 other upstream 1543173 35382438 ~ 35382617 (+) False XLOC_017489
TCONS_00034756 other upstream 1636819 35279996 ~ 35288971 (+) False XLOC_017488
TCONS_00034743 other upstream 1861809 35062806 ~ 35063981 (+) True XLOC_017485
TCONS_00034815 other downstream 861416 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034825 other downstream 1154223 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034845 other downstream 1661092 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other downstream 1661160 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034852 other downstream 1815398 38774972 ~ 38775087 (+) True XLOC_017538