RNA id: TCONS_00034853


Basic Information

Item Value
RNA id TCONS_00034853
length 5655
RNA type mRNA
GC content 0.47
exon number 48
gene id XLOC_017539
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38837238 ~ 38900420 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGACGGTAACCACGGGGAAAGCTGTGTTTACCAAAATGTCTGCAGCCTGACAACTATTATGGCTATATCAAGAAATACGTTCTTTTAACTGCCCTGAGTCTTATTATAAACTTGAAGTATGCAGCTTAAGTACATGAAGACTCTTTTAACGCCTCAGGATGGAGCTGCTAAAGTCACCTGTATGGCTTGGGCTCCAAACAATGCAAAGTTTGCAGTGTGCACTATTGATAGAGTGGTTATTTTGTATGATGAGCAGGGAGAGAAAAGAGACAGATTTACAACAAAGCCTGCTGACCCAAAATATGGAAAGAAAACCTATGTGGTCAAGTCTATGGCATTTTCCCCTGATTCAACCAAGATAGCAGTTGCTCAAACAGACAACATCATATTTGTTTACAAAATTGGAGAGGAGTGGGGAGATAAAAAAGTTATTTGCAACAAGTTCATTCAAACAAGTGCTGTTACAAGCCTGGTTTGGCCGTCTGAGCATGCAATTATATTTGGACTAGCAGAAGGAAAAGTTCGACAAGCTAATACAAAAACAAGCAAGTCCTCAACAATCTATGGGACAGACTCTTATGTTGTCTCACTAACCTCAAATGTATCAGGAAAGGGAATCCTTTCCGGTCACGCAGATGGAACGGTGGTTCGGTATTTCATTGATGATGAAGGATCTGGGGAATCTCAGGGCAAACTGCTGACTCATGCATGTCCACCATATGCCTTAGCATGGGGCACAAACAGCATAATTGTGGCTGGGTGCGATAAGAAGATTGTTGCCTATGGAAAGGAGGGCAACGTGATTCAGACATTTGATTACAGCCGAGATCGAGCCGAAAAGGAATTCACTGTGGCTGCATCGAGCCCTAGTGGCCAGTCCATAGTTGTAGGAAGCTTTGACAGATTGCGAGTTTTTAATTGGAGTCCTCGAAAAGGCACATGGGATGAATCTTCTCCCAAAGAAATTCCAAACCTGTACACCATCACAGCTCTCTCCTGGAAAAAAGATGGCTCTCGGCTTTCTGTGGGCACTCTGTGTGGAGGTGTCGAGATGTTTGACTGCTGTCTCCGCCGGagtatttacaaaaacaaatttgaGATGACATACGTAGGACTAAGTCAGGTGATTGTGAGGAATTTGTCCACTGGCACACGAGTAGTACTGAAGTCTCAGTATGGCTATGAGATAGATGAGGTGAAAGTCATGGGAAAGGATCAATATCTTGTGGCTCATACCTCTGACACACTGCTACTGGGAGATCTGGTGTCCAACAAACTAAGTGAGGTGGCGTGGCAGGGCTCTGGGGGAAATGAAAAGTTTTTCTTTGAGAATGAAACGGTGTGTATGATTTTCAATGCTGGAGAGCTGGCACTGGTGGAATATGGAAGCAATGACATCCTGGGATCTGTTCGAACAGAGTTTATGAACCCACACCTTATCAGTGTGCGTCTGAATGAGAGGAGGCAGAGGGGAGTGGAGGATAACAAAAAGTTGGCCTACCTGATTGACATCAAAACTATTGCTATCGTGGACCTGGTGGGGGGGTATAATCTAGGCACAATAAGCCATGACTCCAAGATAGACTGGCTGGAGCTGAATGAAACGGGCCGTAAACTGCTTTTTAGGGACAAGAAACTCAGGCTCCACCTTTACGATATAGAGAGTAGTGTGAAGAGCACCATGCTGAGTTTCTGCCCTTATGTTCAGTGGGTACCGGGCAGTGATGTTGTTGTGGCTCAGAATAGAGGAAACCTGTGTGTTTGGTACACCATCGACAGCCCAGAGAGGGTCACAATGTTTCCCCTCAAGGGTGATATTGTAGACCTGGAGAGATCTAATGGTAAAACCGAGGTCATTGTGAATGAAGGGGTTAACTCAATCTCCTACACTCTGGATGAGGGACTCATTGAATTTGGCACAGCAATTGACGATGGGGATTATTAcagAGCCACAGCATTCCTGGAGACCCTGGAGATGTCTGCAGAGACAGAGGCCATGTGGAAGACTCTGAGTAAACTCTCCCTGGAGGCTCAACAGCTCCACATCGCTGAGAGGTGTTTTGCAGCCCTTGGCGATGTGTCCAAAGCCCGTTTCCTAAATGAGACCAATAAGATTGCAGATGCGGTTGCAAAAGAATATGATGGTGATGGAACAGACCACTATCAGGTGAAAGCACGGCTGGCCATGCTGGATAAGAACTTTAAGCTTGCAGAGATGTATTACATGGAGCagAATGCAGTGGATGAAGTCATGGAAATGTACCAAGAGCTCCACATGTGGGATGAATGTATTGCAGTGGCAGAAGGAAAGGGCCACCCAGAGTTGGATAATTTGAGACGCAGTTATTATTCTTACCTAATGGAGACCAATCAGAATGAGAAAGCCGCTGAGGTGAAGGAGAACGAAGGAGACTTCACCGGTGCTGTTAACCTCTACCTAAAAGCAGGACTACCTGCCAAAGCAGCTTGGTTAGCCATGAGCAAAGATGAGCTTCTGTCAAGCCAGGACATCGTCAGCCGCATCACTGCTGCACTCATCAAAGGAGAGTTTTATGAGAGGGCTGGAGACCTGTTTGAAAGGACAAGAAATAATCAGAGAGCCCTGGAGTGTTACCGCAAAGGAAATGCTTTTAAGAAAGCGGTGGATTTGGCTCGGGTTGCCTTTCCTGCAGAAGTTGTGAAGCTGGAGGAAGTGTGGGGTGACTACTTAGTGCAGCAGAAACAAATGGATGCTGCCATCAACCATTACATCGAAGCTGGACGCTCCATCAAGGCGATAGAAGCAGCTATCGCAGCTCGTCAGTGGAAGAAAGCATTGCACATTCTAGAGCTACAGGAGGACAGGACTGCTGCCAAATATTACCTGAAGATTGCCCAGTACTACGCCTCTGTGCAGGAATTTGAGGTAGCAGAGCGTCTGTTTGTCAAGGGTGATCACATTAAAGATGCTATAGATATGTACACTCAGGCTGGCCGATGGGAGCAAGCTCATAAGCTTGCTGTAAAGTGTATGACACAAGAAGATGTGTCTGTCCTCTACGTCAGCAGAGCACAAGAGCTAGAGAAAGAGGGCAAGTACAAAGAAGCCGAAagGCTTTTTACAACAGTAGATGAACCAGATCTCGCCATCACTATGTACAAGAAGAACAAGATGTATGATGACATGATTCGTTTAGTTGCTGTTCATCACAAAGACCTGCTGCAGGAAACACACATTCACCTGGCCAAGGAACTAGAGGCTGAATCCAGGTTTCAGGAAGCCGAGTATCACTACCTTGAGGGTCAGGACTGGAAAGCTGCTGTCAACATGTACAGAGTCAATGATATGTGGGAGGAAGCTTATCGGATAGCAAAAACCCACGGAGGAGCCAATGCCCACAAGCAAGTGGCCTACCTGTGGGCAAAAAGCCTCGGAGGAGAGGCAGCAGTTAAACTCCTCAACAAGTTTGGCCTTCTggaaactgccattgactttgcAGCAGATAACTATACGTTTGACTTTGCCTTTGAGTTGGCTCGACTCTCCATGAAGCAGAAGATTCCTGATATTCATCTCAAAAATGCCATGTTCCTTGAGGACCAGgGCAAATTCAATGAGGCTGAAATTGAGTTCATCAAAGCTGGAAAACCCAAAGAGGCTGTGCTAATGCACGTTCATAACAAGGACTGGAGTAATGCCCAGAGAGTTGCAGAGGCTCATGATCCGGAAAGTGTGGCAGACATTCTTGTGAGCCAGGCCAAGTTCTGCTTTGACCAGAAGGAATTTCAAAAAGCTGAGGCCTTCTTGCTCAGGGCACAAAGGCCGGAGCTAGCTATTAAATACTACAAAGATGCTGGGATGTGGACTGATGCAATGCGGATCTGCAAAGACTATTTGCCCAGCAAGCTGAGCGTCCTTCAAAAGGAATATGAAAGCGAGGGCAACTGgggTGTGGAAGGGATGATTGAGCAAGCTCAAGAGTGGGAACAGACCGGAGAGTATTCAAGAGCTGTGGACTGCTATCTGAAAGTGAAGGACTCATCTAACTTGGACTTGCTGTTGAAGTGTTGGATGAAGGCAGCGGAATTGGCCATTAAATTTTTATCCCATGACAAGGCTGTGGACGTAAGTCAGATTGTCGGTCCACGTCTGATTCAGCTCCGAAAGTACAACGAGgctgcTGAGCTCTACCTCAACCTAGACCTCATTAAGAACGCCATAGACGCATTCATTGAGGGGGAAGAATGGAACAAAGCCAAAAGAGTGGCCAAGGAGCTGGATCCAAGACTTGAGGAGTATGTGGACAAACGCTACAAAGAGCACCTGAAAAATCAAGGCAAAGTTGACTCTttgGTTGGAGTAGATGTGGTTGCTGCACTGGACATGTATGCAGAACGAGGACAGTGGGAGAAATGTATTGACACAGCCTCCAAACAGAATTTTAAGGTGCTGCACAAGTACATCGCCCTGTACGCCACCCACCTGATCAAAGAAGGTGAGGTGGAGAAAGTGCTCAGCCTGTACATCCAGCATGGAGTTCCAGCTTATTCACAGAACTTCAACATCTACAAGCGGATGTTCCAGGAGCTGGTGAACCTAAGGGACCGGGATTGTGCGGAAGCCTTTCGGATGTGGTCAGATCTACGGGACGTCCTTCTGTTGTTGTGTGAAAACCTGACCAAGTCATCAGAAGCTAATTCTCCAGCGCATGAGGAGTTTGAGCAGATGTTGCTGGTTGCTCACTATTACGCCACTCGTTCTGCAGCCAAAGGCATTGACCAGCTGAGTTCTGTGGCGGCCAAGCTGTCCATCTCTCTCCTGAGGCACACCGAGCTCATTCCAGCTGACAAGGCCTTTTATGAGGCTGGCCTGGCAGCCAAGGCTGTTGGATGGGAGAACATGGCTTTTATCTTCCTCAATCGCTTCTTGGATTTGGCTGATGGCATTGATGAGGGAACACTGGATGCTTTAGATCACACAGACTTCCAGGATACAGACATCCCATTTGAGGTCCCTGTTCCTTCCAGGCTACACGTCACAGTGGAGAAGAGGGAGGAGATTAGAGAATGGGTTCTGACTGTGTCCATGGACCAGCGGGTGGAGCAGGTGCTGCCGAAGGATGAGAGGGGCACGTACGAAGCCTCCCTCGTGGCCGCCAGCACTGGCATCCGGTCCCTACCTTGCGTCATCACAGGTTACCCCGTCCTCCGTAATAAAATTGAGTTCAAAAGACCAGGCATGGCAGCCAATAAAGATGACTGGAATAAATTCTTGATGGCTACAAAGACCACTCACAGTCCAGAATGTCAAGATGTGCTGAAATTTATCACGCAGTGGTGTGGAGGTCTCCCATCAGCTGGATATTCCTTTCACTAAGAACGGGGAAGGTGCACAATATCTATTTCTCTATCTGTCGTCATCCACACATTCACCTCCCAGCTTCTCTGCAGAAACATTTAATCAGCCTTTTTTATTCGCTTTTCCAAAGGCAATGTTCACTTCTTGGTCATCATTCCCTggccatttattatatttaaagtatCATGAGGTCAGTACCCAAAGCTCATTTTCTGCGTATGTTAAATATGGGAAGCCTTTGTAACATATTCCCTAGTTCGTACGAGCTGgatattttgatatttaaacacttaataaaaaactatatttcATAAA

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0048793 pronephros development biological_process
GO:0007275 multicellular organism development biological_process
GO:0060271 cilium assembly biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0030992 intraciliary transport particle B cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040827-1 Acts upstream of or within several processes, including animal organ development; photoreceptor cell maintenance; and regulation of TOR signaling. Predicted to be located in cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in axoneme and ciliary basal body. Used to study cystic kidney disease. Human ortholog(s) of this gene implicated in retinitis pigmentosa 71 and short-rib thoracic dysplasia 10 with or without polydactyly. Orthologous to human IFT172 (intraflagellar transport 172).

Ensembl:

ensembl_id ENSDART00000061334

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036644 lncRNA upstream 238359 38590508 ~ 38598879 (+) True XLOC_017534
TCONS_00036643 lncRNA upstream 389991 38373672 ~ 38447247 (+) True XLOC_017530
TCONS_00036641 lncRNA upstream 698815 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036645 lncRNA downstream 147639 39048059 ~ 39053466 (+) False XLOC_017541
TCONS_00036646 lncRNA downstream 147651 39048071 ~ 39059365 (+) False XLOC_017541
TCONS_00034856 lncRNA downstream 147694 39048114 ~ 39052699 (+) False XLOC_017541
TCONS_00034857 lncRNA downstream 148754 39049174 ~ 39195117 (+) False XLOC_017541
TCONS_00036647 lncRNA downstream 151160 39051580 ~ 39053466 (+) True XLOC_017541
TCONS_00034849 mRNA upstream 109842 38724575 ~ 38727396 (+) False XLOC_017537
TCONS_00034851 mRNA upstream 111155 38725662 ~ 38726083 (+) True XLOC_017537
TCONS_00034850 mRNA upstream 111176 38724579 ~ 38726062 (+) False XLOC_017537
TCONS_00034848 mRNA upstream 120709 38671894 ~ 38716529 (+) True XLOC_017536
TCONS_00034846 mRNA upstream 166542 38620681 ~ 38670696 (+) False XLOC_017535
TCONS_00034854 mRNA downstream 9794 38910214 ~ 39046181 (+) False XLOC_017540
TCONS_00034858 mRNA downstream 322815 39223235 ~ 39259880 (+) False XLOC_017542
TCONS_00034859 mRNA downstream 350253 39250673 ~ 39255036 (+) True XLOC_017542
TCONS_00034860 mRNA downstream 383429 39283849 ~ 39299534 (+) False XLOC_017543
TCONS_00034861 mRNA downstream 383429 39283849 ~ 39300730 (+) True XLOC_017543
TCONS_00034852 other upstream 62151 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034845 other upstream 188348 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other upstream 203778 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034825 other upstream 717348 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034815 other upstream 1011102 37820990 ~ 37826136 (+) False XLOC_017519
TCONS_00034855 other downstream 9821 38910241 ~ 39046180 (+) True XLOC_017540
TCONS_00034862 other downstream 431549 39331969 ~ 39332092 (+) True XLOC_017544
TCONS_00034905 other downstream 3732565 42632985 ~ 42633105 (+) True XLOC_017575
TCONS_00034912 other downstream 4105884 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034930 other downstream 5239325 44139745 ~ 44139861 (+) True XLOC_017600

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01815422_01845569.mRNA True 5707 mRNA 0.47 49 CI01000029 1815422 ~ 1845912 (+)