RNA id: TCONS_00034856


Basic Information

Item Value
RNA id TCONS_00034856
length 968
lncRNA type lincRNA
GC content 0.43
exon number 3
gene id XLOC_017541
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39048059 ~ 39195117 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATAAGGTTGTACCATAGGCAAATTCGTGTTTATGGCAGGCTGGATTGTGTGTTCACATTTGTGTGCTTGTTCTAGATCCATCTGTCTATTCCAATCGCATACATAGCTATTCATCCTTCCATCTGTCTGCTACCTATGTGTTTCCTTCCATCCCAGCCATGCAAACAAGTGCTCTCATCCCTTTCTAAAAGTGTCAGCGCATATTTCATCTCCTCAATTAAAGACTTGACTGCAAtcccacacaaacaaacacagcctCTAGCATTCACACGCAGCAGAATCTGTGGATGTTTTACAAGGAACACTGAAAAACTGGGGCCTTTGACAACCACACAAACAATTGCTCTGGAAACAAAATGGCCGCAGTATTGATCACTCTGAGGAAAGTCTGTAAAAATATGGACAAATATGAGGAGAGAATATGGGAAGAGCTGACTGGCCAAGCAGGCGATAATGAATTGGAAGGGAAAGTCCAAGGCAGTGGATGAGACGCAGACCAGAGTGTGCACTGCTAACCTTTGCGAGCGCTAAATCAAATAAGGCTTGAGGCTGCGGTAGCATCTGTGTGTCACGAAGCAGACGGCGATGTCAGATAAGAGCAGTAAGTGTACCCTGTTTCCAGAACAGCGAAGGAGTCAGGATGGGGTGTGTTACTTCTACATTCTTTCAGGCTAATGGACACAGACTGGCAAACCAACAGCATTTATACCAAGGAACAATCCAGGTATTTTAAGAAACACAGAATATGAGGAGCTGTGACTCCCACCCTTAACAAGTCATAAACACTGAACAACAGACATTTAAGCCTGATAATCTCCTTACATTTacaacacactcatacaataatACTTCAACATAGGGTGCTAGTCAGGCATCACAGTAATGACACATCACAGTGCTGATGTACTGTCCGGAATGGGTGACATTTTATGGTCTTGGAAGAAATATTATAACTTGACTAACCGTA

Function

GO:

id name namespace
GO:0030237 female sex determination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000142778

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036644 lncRNA upstream 449235 38590508 ~ 38598879 (+) True XLOC_017534
TCONS_00036643 lncRNA upstream 600867 38373672 ~ 38447247 (+) True XLOC_017530
TCONS_00036641 lncRNA upstream 909691 38128054 ~ 38138423 (+) False XLOC_017524
TCONS_00036407 lncRNA downstream 796012 39848711 ~ 39882360 (+) True XLOC_017552
TCONS_00034874 lncRNA downstream 867744 39920443 ~ 39921106 (+) True XLOC_017553
TCONS_00034879 lncRNA downstream 1120680 40173379 ~ 40202673 (+) True XLOC_017554
TCONS_00036648 lncRNA downstream 1187463 40240162 ~ 40248146 (+) True XLOC_017555
TCONS_00034882 lncRNA downstream 1404960 40457659 ~ 40462238 (+) False XLOC_017556
TCONS_00034854 mRNA upstream 1933 38910214 ~ 39046181 (+) False XLOC_017540
TCONS_00034853 mRNA upstream 147694 38837238 ~ 38900420 (+) True XLOC_017539
TCONS_00034849 mRNA upstream 320718 38724575 ~ 38727396 (+) False XLOC_017537
TCONS_00034858 mRNA downstream 170536 39223235 ~ 39259880 (+) False XLOC_017542
TCONS_00034859 mRNA downstream 197974 39250673 ~ 39255036 (+) True XLOC_017542
TCONS_00034860 mRNA downstream 231150 39283849 ~ 39299534 (+) False XLOC_017543
TCONS_00034861 mRNA downstream 231150 39283849 ~ 39300730 (+) True XLOC_017543
TCONS_00034863 mRNA downstream 292190 39344889 ~ 39359154 (+) True XLOC_017545
TCONS_00034855 other upstream 1934 38910241 ~ 39046180 (+) True XLOC_017540
TCONS_00034852 other upstream 273027 38774972 ~ 38775087 (+) True XLOC_017538
TCONS_00034845 other upstream 399224 38620666 ~ 38648890 (+) False XLOC_017535
TCONS_00034847 other upstream 414654 38620734 ~ 38633460 (+) True XLOC_017535
TCONS_00034825 other upstream 928224 38113797 ~ 38119890 (+) True XLOC_017523
TCONS_00034862 other downstream 279270 39331969 ~ 39332092 (+) True XLOC_017544
TCONS_00034905 other downstream 3580286 42632985 ~ 42633105 (+) True XLOC_017575
TCONS_00034912 other downstream 3953605 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034930 other downstream 5087046 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034931 other downstream 5145999 44198698 ~ 44198815 (+) True XLOC_017601

Expression Profile

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