RNA id: TCONS_00036705



Basic Information


Item Value
RNA id TCONS_00036705
length 407
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id XLOC_017674
representative True

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 48072385 ~ 48083397 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GCAGGCCAAACATCTCCATCCTGAAGATACACCTGCAGACGTCCACCCGCAACACATCTGGAGGGTTTATTCAGCTGGGCGTTTGGATCATTTGTTGTCCTGTGAGGAAGAGAGCTCCAGCAACTGGATGTGCTTCATAAACTCCGCTCAATCTCCTTGGCAGCAGAATCTTGCCCCGTTTCAAGTAGGAATGCAGATTTACTTCAGCGCCATGAAGGTTATAATGCCTGGGGAGGAGCTAATGGTGGGGCGGAGCCTAGAGTACAGGCAGCCAATGAGCAGCAGTCTTAGGACTTCCGGTCTGAAACAGCCACCTCCCACACACACTGATCCTCAAGGTAAAGTTAGAAAGAGAAAAAGAGGTTACACTGTGACTGAGATCCTGGATCTGGACCCCCGGACTGACC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00036421 lncRNA upstream 4297 48061746 ~ 48068088 (+) True XLOC_017673
TCONS_00036703 lncRNA upstream 37710 47988451 ~ 48034675 (+) False XLOC_017672
TCONS_00036704 lncRNA upstream 37710 47991270 ~ 48034675 (+) True XLOC_017672
TCONS_00036420 lncRNA upstream 367650 47668588 ~ 47704735 (+) False XLOC_017668
TCONS_00036702 lncRNA upstream 367650 47668627 ~ 47704735 (+) True XLOC_017668
TCONS_00036706 lncRNA downstream 413143 48496540 ~ 48499747 (+) True XLOC_017678
TCONS_00036707 lncRNA downstream 419031 48502428 ~ 48517458 (+) True XLOC_017679
TCONS_00036422 lncRNA downstream 484857 48568254 ~ 48569823 (+) True XLOC_017681
TCONS_00036423 lncRNA downstream 487063 48570460 ~ 48571101 (+) True XLOC_017682
TCONS_00036425 lncRNA downstream 487910 48571307 ~ 48579008 (+) False XLOC_017683
TCONS_00035013 mRNA upstream 87490 47953047 ~ 47984895 (+) True XLOC_017670
TCONS_00035011 mRNA upstream 540516 47491247 ~ 47531869 (+) True XLOC_017666
TCONS_00035010 mRNA upstream 600790 47434709 ~ 47471595 (+) True XLOC_017665
TCONS_00035008 mRNA upstream 870283 47196506 ~ 47202102 (+) True XLOC_017663
TCONS_00035007 mRNA upstream 920519 47143900 ~ 47151866 (+) True XLOC_017660
TCONS_00035015 mRNA downstream 16864 48100261 ~ 48105263 (+) True XLOC_017675
TCONS_00035016 mRNA downstream 33079 48116476 ~ 48139940 (+) False XLOC_017676
TCONS_00035017 mRNA downstream 46362 48129759 ~ 48139941 (+) True XLOC_017676
TCONS_00035018 mRNA downstream 330315 48413712 ~ 48447840 (+) True XLOC_017677
TCONS_00035019 mRNA downstream 460095 48543492 ~ 48545232 (+) True XLOC_017680
TCONS_00035014 other upstream 90114 47982137 ~ 47982271 (+) True XLOC_017671
TCONS_00035012 other upstream 312477 47759786 ~ 47759908 (+) True XLOC_017669
TCONS_00035009 other upstream 665121 47407150 ~ 47407264 (+) True XLOC_017664
TCONS_00035005 other upstream 966128 47106094 ~ 47106257 (+) True XLOC_017658
TCONS_00035004 other upstream 967512 47104710 ~ 47104873 (+) True XLOC_017657
TCONS_00035020 other downstream 526955 48610352 ~ 48610467 (+) True XLOC_017684
TCONS_00035021 other downstream 527798 48611195 ~ 48611310 (+) True XLOC_017685
TCONS_00035022 other downstream 528860 48612257 ~ 48612370 (+) True XLOC_017686
TCONS_00035023 other downstream 529924 48613321 ~ 48613436 (+) True XLOC_017687
TCONS_00035033 other downstream 949607 49033004 ~ 49033118 (+) True XLOC_017695

Expression Profile


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