RNA id: TCONS_00035030


Basic Information

Item Value
RNA id TCONS_00035030
length 1491
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id XLOC_017693
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 48918454 ~ 48988114 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAACAAGCATTTTAGCGCGTGGACTGTTTAATTCAATTTGATTGGCTGCCGTTCCAAGAGCGGGAAAGTTGCGTATCGTCATCGTGTCAATGGCGTCCTAAAATGTTTGGGGATAATGCTGTTCTATGACGGATTGAAGGTCGTTTTATTTCGCGAACGAAGACGGAAATGTTTTACCTGAGGATTGGAGCAGGGTTTTAGTGTTTTCTCTTGCCATTTGAAGCGAGAAACACATTTTACTGTGAAGAAATGAACCGACTGGAACCGAATGCGGTTTGATGCTTCTTGCCTGAAACgtgcTAAAGGAAGGTCAAACAATCACAGGCCTCGGAAAATACCCTTCTGTGTGTCACACAATATGAGcATCTACAGGTTACGGTTGGCGTCATCATTAGCAGGTCTGTGTCAGCCAGCAGCCCAGAGGGAGTTCAGAGAGGACCTGAGCTGTGAGATGAGGTGAAAGCAGCCCATATTCCCTCAGTGACGGAGCGGCAATTACCCCAAACTGTGAGTGCGTCCTCCTACCGGCCGCAGGAACAATGGACTGTCTGTCAGTGGCGGTGTTGCCCAAGCAGAACAGATGTGTGTGGACACGCGAGACAATGGCGTGGCTGGATAAGTGGGTTCCTGATCTCCGAGGCAGGGGGGTCGGGGGGGACGGCAGCTTGTGTCCGAGACGCCTCCGTGGGGCGAGGGAGAAATCCACAGGACCAGCGAAGAGCCCGATccatcccaaacacacacacacacactcaggagcTGTCATGGCCCCTGCGGAGACAGACCCTGCTGATCGGCTGCTAATGGACATCTGCTATAAATGCCTCGCACCCGTCGCTCTGATGAGACGGAGATTAGTGCGTATCGTGGATGCACGTCCGCTCTACTCACACAAACAAAGCAAACTGACGAGAAATAATGCAAAATCCACTGGGCTAAGTGGAAAATCCCCTGTATGAAGTCACACTCAGTCCATAAGGAAGGCCGGATCAGCCGGGAGACGTGTCAGTCCATCTGAACCACTGCCAATTTTCAAATTAGCACCAATTTTCTCCCCGGAcagcagttggcgtttctctttTAAGATTGTTGCTTTCGTTTTGAAAAATATGGTTCCTCTGATGTCATAGAGGATCTTATTTTTACGATTCCTAGAGAACCTtttcttggttttgttttttaggacatttttaaaatctgacTTTAAAGAACCTTCCGTGGAATGGAAATATTATGTGTAAAGTAAAAGCTTCTAAGTGGAACCCTCTATAGCTATTTTAATATCCTCCTGTTTTATGTGCATTTCAGAAAGTCGcattaaaaaaagcttaaaggttcaagacactcTGGAGTACTGTTTTTGAGAGCACCTGTCAGCTTAAATTGTGGGTAAAACTGAatgattttgagcttttgtcagctaatttaatTTTCCCGGtttgaaataatttttggggcgggagAAAAATCTGTGACTTAGCGAGAATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035029 lncRNA upstream 24453 48893342 ~ 48894001 (+) True XLOC_017692
TCONS_00035028 lncRNA upstream 30921 48886477 ~ 48887533 (+) True XLOC_017691
TCONS_00036426 lncRNA upstream 334855 48578432 ~ 48583599 (+) True XLOC_017683
TCONS_00036425 lncRNA upstream 339446 48571307 ~ 48579008 (+) False XLOC_017683
TCONS_00036723 lncRNA downstream 24020 49003776 ~ 49027273 (+) True XLOC_017694
TCONS_00036724 lncRNA downstream 172324 49152080 ~ 49168636 (+) True XLOC_017697
TCONS_00036725 lncRNA downstream 209981 49189737 ~ 49204478 (+) False XLOC_017698
TCONS_00036726 lncRNA downstream 210074 49189830 ~ 49304606 (+) False XLOC_017698
TCONS_00036727 lncRNA downstream 210074 49189830 ~ 49351555 (+) False XLOC_017698
TCONS_00035027 mRNA upstream 111726 48803248 ~ 48806728 (+) True XLOC_017690
TCONS_00035026 mRNA upstream 132463 48782068 ~ 48785991 (+) True XLOC_017689
TCONS_00035024 mRNA upstream 143387 48739154 ~ 48775067 (+) False XLOC_017688
TCONS_00035025 mRNA upstream 143860 48754045 ~ 48774594 (+) True XLOC_017688
TCONS_00035019 mRNA upstream 373222 48543492 ~ 48545232 (+) True XLOC_017680
TCONS_00035034 mRNA downstream 102211 49081967 ~ 49103317 (+) True XLOC_017696
TCONS_00035035 mRNA downstream 139877 49119633 ~ 49175503 (+) False XLOC_017697
TCONS_00035036 mRNA downstream 807828 49787584 ~ 49800330 (+) False XLOC_017701
TCONS_00035037 mRNA downstream 807828 49787584 ~ 49801935 (+) False XLOC_017701
TCONS_00035038 mRNA downstream 807828 49787584 ~ 49801983 (+) False XLOC_017701
TCONS_00035023 other upstream 305018 48613321 ~ 48613436 (+) True XLOC_017687
TCONS_00035022 other upstream 306084 48612257 ~ 48612370 (+) True XLOC_017686
TCONS_00035021 other upstream 307144 48611195 ~ 48611310 (+) True XLOC_017685
TCONS_00035020 other upstream 307987 48610352 ~ 48610467 (+) True XLOC_017684
TCONS_00035014 other upstream 936183 47982137 ~ 47982271 (+) True XLOC_017671
TCONS_00035033 other downstream 53248 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035066 other downstream 2232176 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035075 other downstream 2536446 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035099 other downstream 3940100 52919856 ~ 52919986 (+) True XLOC_017742

Expression Profile

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