Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00002803 |
| length | 783 |
| lncRNA type | sense_over |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_000015 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 227241 ~ 243798 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002802 | lncRNA | upstream | 867 | 227253 ~ 235533 (+) | False | XLOC_000015 |
| TCONS_00002801 | lncRNA | upstream | 13596 | 221385 ~ 222804 (+) | True | XLOC_000014 |
| TCONS_00003002 | lncRNA | upstream | 79118 | 156792 ~ 157282 (+) | True | XLOC_000011 |
| TCONS_00000021 | lncRNA | upstream | 103185 | 127266 ~ 133215 (+) | False | XLOC_000008 |
| TCONS_00003003 | lncRNA | downstream | 118058 | 355481 ~ 358562 (+) | False | XLOC_000018 |
| TCONS_00003004 | lncRNA | downstream | 118348 | 355771 ~ 358562 (+) | True | XLOC_000018 |
| TCONS_00000055 | lncRNA | downstream | 343265 | 580688 ~ 586501 (+) | True | XLOC_000023 |
| TCONS_00003005 | lncRNA | downstream | 557553 | 794976 ~ 898180 (+) | False | XLOC_000026 |
| TCONS_00003006 | lncRNA | downstream | 557553 | 794976 ~ 911551 (+) | True | XLOC_000026 |
| TCONS_00000030 | mRNA | upstream | 11263 | 218524 ~ 225137 (+) | False | XLOC_000014 |
| TCONS_00000028 | mRNA | upstream | 54142 | 176583 ~ 182258 (+) | False | XLOC_000013 |
| TCONS_00000029 | mRNA | upstream | 54142 | 176586 ~ 182258 (+) | True | XLOC_000013 |
| TCONS_00000027 | mRNA | upstream | 69002 | 158034 ~ 167398 (+) | True | XLOC_000012 |
| TCONS_00000026 | mRNA | upstream | 78264 | 157793 ~ 158136 (+) | False | XLOC_000012 |
| TCONS_00000033 | mRNA | downstream | 7653 | 245076 ~ 258138 (+) | True | XLOC_000016 |
| TCONS_00000034 | mRNA | downstream | 22616 | 260039 ~ 296055 (+) | False | XLOC_000017 |
| TCONS_00000035 | mRNA | downstream | 22616 | 260039 ~ 296057 (+) | False | XLOC_000017 |
| TCONS_00000037 | mRNA | downstream | 29612 | 267035 ~ 269883 (+) | False | XLOC_000017 |
| TCONS_00000038 | mRNA | downstream | 40308 | 277731 ~ 280259 (+) | False | XLOC_000017 |
| TCONS_00000003 | other | upstream | 223143 | 12129 ~ 13257 (+) | False | XLOC_000001 |
| TCONS_00000036 | other | downstream | 22617 | 260040 ~ 293894 (+) | False | XLOC_000017 |
| TCONS_00000047 | other | downstream | 276590 | 514013 ~ 515322 (+) | True | XLOC_000021 |
| TCONS_00000052 | other | downstream | 300166 | 537589 ~ 546217 (+) | False | XLOC_000023 |
| TCONS_00000053 | other | downstream | 339021 | 576444 ~ 576521 (+) | True | XLOC_000024 |
| TCONS_00000060 | other | downstream | 981268 | 1218691 ~ 1218805 (+) | True | XLOC_000029 |
