RNA id: TCONS_00003821


Basic Information

Item Value
RNA id TCONS_00003821
length 352
RNA type processed_transcript
GC content 0.49
exon number 2
gene id XLOC_001951
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10801564 ~ 10824286 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACGAACAGAAGGATGCGTGTGTTTTTGCTGTTTCTGCCTCTGCTGGGGCTCCTGGAGGCTGGACCTCTGCCGGATGAGCCCGTCCTGCAGACACAGGAGAACTTCAATGTCAATCGGTTCATGGGGAAATGGTATGATATTGCGGTGGCGTCCACATGTCCTTGGATGAAGCGTCATAAAGGAGACGCAGCCATTGGTTCTCTGGAACTGCAGTCCAGCGGGTCACCACAAAGCCTCAGCATGACCCGCATCGGCCTCAGGTACAAACACAAACATCAACAGCAAATTAATAATcaatcacaaacacactcaaatgGCTCTCAATGCAATTAGAGCTAAAATGTCAATTC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040426-1608 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within protein-chromophore linkage. Predicted to be located in extracellular region. Predicted to be active in cell surface and plasma membrane. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in acute kidney failure and adult respiratory distress syndrome. Orthologous to human AMBP (alpha-1-microglobulin/bikunin precursor).

Ensembl:

ensembl_id ENSDART00000135457

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003816 lncRNA upstream 64455 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00005832 lncRNA upstream 505916 10288294 ~ 10295789 (+) True XLOC_001943
TCONS_00005687 lncRNA upstream 505957 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00003804 lncRNA upstream 606103 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00005686 lncRNA upstream 614447 10178168 ~ 10187258 (+) True XLOC_001941
TCONS_00005833 lncRNA downstream 13558 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA downstream 13558 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003828 lncRNA downstream 176877 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005834 lncRNA downstream 456798 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00005688 lncRNA downstream 710030 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00003819 mRNA upstream 4769 10788811 ~ 10796936 (+) True XLOC_001950
TCONS_00003818 mRNA upstream 5529 10788811 ~ 10796176 (+) False XLOC_001950
TCONS_00003817 mRNA upstream 18895 10738880 ~ 10782810 (+) True XLOC_001949
TCONS_00003815 mRNA upstream 64455 10728870 ~ 10737250 (+) False XLOC_001948
TCONS_00003813 mRNA upstream 100936 10636237 ~ 10700769 (+) False XLOC_001947
TCONS_00003826 mRNA downstream 169439 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003829 mRNA downstream 234836 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003831 mRNA downstream 456814 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA downstream 458220 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003833 mRNA downstream 462031 11265387 ~ 11283239 (+) False XLOC_001955
TCONS_00003803 other upstream 888528 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 1075814 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 1453199 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 1921579 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 1932810 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003825 other downstream 19399 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 169454 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 312498 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 695337 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 971049 11774405 ~ 11774519 (+) True XLOC_001963

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU482995 True 4078 lncRNA 0.41 5 CI01000304 5190604 ~ 5197784 (+)
rainbow trout (Oncorhynchus mykiss) TU482995 True 240 lncRNA 0.40 1 NC_048569.1 64093636 ~ 64093875 (+)