RNA id: TCONS_00040178


Basic Information

Item Value
RNA id TCONS_00040178
length 1937
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_020202
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9761930 ~ 9763971 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTAGTCGTATTACTATTTGGTCAACTGTGTATAATTTTTCACTTATTTGCAGCTCATCTGCCAGTTCCTGTAATTAGCAGCAACTCTATAAACGGTTtaacatcttcatcatcatcttcatcagttCAGAGATGTTCAGTGTTGTGTTCAGTGGCGAATGTGAGtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaaGATCAGGATAAAAGCACCTACAGCTGTGTGGTCAACAACACCATCACAAACCACACCACACAACTGGACATCAGTCAAATCTGTCAGAGAAGATCAGAAACATTCCATTATGCATATTTCCTGCCGCTCATAACCGTTTGTGTGTTTCTGCTGCTCAtttctgcatgtgtgttttaCTGCTGCCGCAATAAATGTGACCAAGACAAACCAGACGGCAAGTATCACTATAGACATGACAGAAAAACTGGTTTAgaacaatttttaaattaataaatgtcatCAGTGTAGTGGCAGGATGATGATAAATGAGCTCAACAtctgcgtgtgtttgtgttttttaagaTGAGAAAAGCATGTCGGAATACACAGAGATCATCTACAGACAAACATCACAGATCATCAGCCGTAAAACACCACAACTCACCACGAACATCTGCTTTCAGACAGAAAACTCAACCTGCCTGCATTAGTCCTGTAGGTTatctattttcatttaattaataaagcACCATTTAATGGAAAACAAGCAGTTTTACAAGATTACAGACTCTAATACAATATGTCCATTCAGTGTAAATGCATTAGTGTTGACTAGAACTATACTAAACCTGTGtatttgattattcaataaacTTTGATTTCTCAATGGGATCtttgattatctttttttatttatttttatttaaagattctGCCTTTATTCtcttaactcatttattttattttgtgtgtttacacacacacacacacacacacacacacacacacacacacacacacacagttctgtctgtttctcaaatctgattggctggtagcCATGAGATATTAAAGCAATATCAGTGCTCATACAGCCtattcacccttgtgtattacttcaCCCATATGAGAGGACAACAGTTTGACAAAAATCGCagttgttggacaacataatgtattttGAGGCTTATTTAGGTGAGAATGTTGTTGTTAAGGTTGCAActattcagtttattcataaggacgttgcatattttaaatattcaaaatctCAGAGATTCAGCATATAGGTGGACATCAGCCTGTtttactgagcagagcaaagacggttgatgttccaCTACAAGATgtcgacagagaccgcataagaggaccaaaacagcatttttttcagcgtacatttcaaactacagctgaacaaatcattataaaatacaTGTGACATTCTAGGtcgatctttctcttttgtattttgtagtgctgtatttataccatagtaatctggtagtgtttgatTTGCCTTGGCAGttttagggttaattattgtgatctctcaATTGCAACAgatttgtcatcactttagatcaTGAGTTCCCAAACTCAATTCTGGAggaccagtgtcctgcagagtttagttccaacagaaacttccaggcaagtgtgttgaaggtAATTCAaggtaaactatgcaggacactagccctccaggaccgaatttcaacacccctgctttagacattacgctagaaaatcattcaaatactagctctaaagtgacgttggtaaaTTAGCAAtggtttttgctgttctgacgtcagcagTAGATGTGAatgaacagcagaaaaaaaagtagttcctcaacaaaaaaaggattttaagaCTCTtcgtgtttaattttcttttttatatacatg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042066 lncRNA upstream 310704 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 325946 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 342528 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 378446 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040166 lncRNA upstream 402527 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040181 lncRNA downstream 18983 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042067 lncRNA downstream 122774 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 134000 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 225934 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 254929 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00040177 mRNA upstream 6819 9751117 ~ 9755111 (+) True XLOC_020201
TCONS_00040175 mRNA upstream 223859 9522971 ~ 9538071 (+) False XLOC_020200
TCONS_00040176 mRNA upstream 231156 9523495 ~ 9530774 (+) True XLOC_020200
TCONS_00040173 mRNA upstream 248869 9472814 ~ 9513061 (+) False XLOC_020199
TCONS_00040174 mRNA upstream 248869 9472820 ~ 9513061 (+) True XLOC_020199
TCONS_00040179 mRNA downstream 760 9764731 ~ 9768550 (+) True XLOC_020203
TCONS_00040180 mRNA downstream 8783 9772754 ~ 9775634 (+) True XLOC_020204
TCONS_00040183 mRNA downstream 29952 9793923 ~ 9795657 (+) True XLOC_020206
TCONS_00040184 mRNA downstream 42896 9806867 ~ 9808339 (+) False XLOC_020207
TCONS_00040185 mRNA downstream 42975 9806946 ~ 9808794 (+) True XLOC_020207
TCONS_00040167 other upstream 378446 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 975637 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 992537 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1062697 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1496281 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040182 other downstream 23096 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 395187 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 730284 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 789757 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 909180 10673151 ~ 10678490 (+) False XLOC_020234

Expression Profile

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