RNA id: TCONS_00040186


Basic Information

Item Value
RNA id TCONS_00040186
length 935
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_020208
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9854088 ~ 9855270 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAACAATAGCCGTTTACTTTAGTGAATTGTGCCATATGATCTTCACTCTTGACAAAAgtattaatacacatttttaaatgtttcttaatttCAGATACATTTGTTTACACAGATGAAGTAAAGTCCGTGACGGAGGGAGAATCTGTCACTCTAAACACAGATATAACATTAAATGGACAGACAGAGATAATGTGGATGTTTAATGTCAACAATTCAGACAGTATTATAGCTGAAATCCAAAGAAATAACATAGACATAGAAGATAACGTGGTATTTAGAGACAGACTGAAGATGGACAATCacactggatctctgaccatcagaAACATCACAACTGAACACTCTGGACTTTATAAACTACAGATTCGCAGGAACAGAGCAGTCTCACACAAGACTTTTACAGTTACTGTATATAcTCATCTTCCTTTTCCTGTCATAACTAATAACTGTTCAAACTGTTCAACATCATCCTCATCCTTTTCATCAAAGTCCAACTGTTCAGTGttgtgttcagtggtgaatgtgagtgctgtgagtctctcctggcacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgaTCAACAACACCATCACAAACCACACCACACAACTGGACATCAGTCAAACCTGTCAGAGATATGAAGGTATAGTCATGTAATTAGTGGTCAGTTACTTAATGTCCAGCCATGTCTGTACAACGATTTTAGAGTTTTAGTAAAAGCATTTTGCTTAAGGATACATCAATATTCCTCTGTATATTATGTTTGTTCATTACAGAACTCACACAGTATAAACATTCAGTGGGAGTAGCAGTTTGTGTTGTGATACCGCTGGTCTTGTCTGTGTCGGTTGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000122678

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040181 lncRNA upstream 62721 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042066 lncRNA upstream 402862 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 418104 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 434686 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 470604 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00042067 lncRNA downstream 31475 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 42701 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 134635 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 163630 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042071 lncRNA downstream 218150 10073420 ~ 10095290 (+) False XLOC_020221
TCONS_00040185 mRNA upstream 45294 9806946 ~ 9808794 (+) True XLOC_020207
TCONS_00040184 mRNA upstream 45749 9806867 ~ 9808339 (+) False XLOC_020207
TCONS_00040183 mRNA upstream 58431 9793923 ~ 9795657 (+) True XLOC_020206
TCONS_00040180 mRNA upstream 78454 9772754 ~ 9775634 (+) True XLOC_020204
TCONS_00040179 mRNA upstream 85538 9764731 ~ 9768550 (+) True XLOC_020203
TCONS_00040187 mRNA downstream 6973 9862243 ~ 9868707 (+) False XLOC_020209
TCONS_00040188 mRNA downstream 7196 9862466 ~ 9865268 (+) True XLOC_020209
TCONS_00040189 mRNA downstream 15968 9871238 ~ 9873199 (+) False XLOC_020210
TCONS_00040190 mRNA downstream 16056 9871326 ~ 9878369 (+) False XLOC_020210
TCONS_00040191 mRNA downstream 17053 9872323 ~ 9880408 (+) True XLOC_020210
TCONS_00040182 other upstream 64284 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 470604 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1067795 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1084695 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1154855 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040207 other downstream 303888 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 638985 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 698458 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 817881 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1807347 11662617 ~ 11674637 (+) True XLOC_020251

Expression Profile

//