RNA id: TCONS_00042069


Basic Information

Item Value
RNA id TCONS_00042069
length 459
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_020216
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9989905 ~ 9991494 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAAAAGCTTGGAGTATAAACTTTATTTTAGAGAGAGTTTAGACTCTAATCTCTCTCTCGGAAAAATAGTTCTATCTAGTTTGAGGGAGTAGTGTCTCAAACTACATTGAAGCATCGTTTAGTGCACATGCAAAGCAAATCCAAggaatgcaaacaatttatattaagGCGTATTTCCGCCTCGATTTAGCCTATTACCTTATCGAAAACAAGTTTCAGAGAGAGGTCTAGACGTAGAGAGGAAAGGAAATTCTACTCCATCAAGCAAACCACGCCTTCATCAGTAAGGATATTTATGTGATCTCCACAAACAGTTTTTTACGCGAACATAATACTTAGTCACGCTGCCACAGAGAATCCGATTAATTACACTGAGCATCAACAGGACACATACAGGTGGAGCCATAGATTTTGTTTACAACCTTTGAAGATGATGAATATCTCATGGATTATTCTGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042068 lncRNA upstream 85282 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042067 lncRNA upstream 85407 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00040181 lncRNA upstream 198538 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042066 lncRNA upstream 538679 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 553921 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042070 lncRNA downstream 27406 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042071 lncRNA downstream 81926 10073420 ~ 10095290 (+) False XLOC_020221
TCONS_00042072 lncRNA downstream 83371 10074865 ~ 10095290 (+) False XLOC_020221
TCONS_00041885 lncRNA downstream 166969 10158463 ~ 10164865 (+) False XLOC_020223
TCONS_00040213 lncRNA downstream 223500 10214994 ~ 10222660 (+) False XLOC_020226
TCONS_00040196 mRNA upstream 5873 9981079 ~ 9984032 (+) True XLOC_020215
TCONS_00040195 mRNA upstream 44268 9939901 ~ 9945637 (+) True XLOC_020214
TCONS_00040192 mRNA upstream 66213 9917007 ~ 9923692 (+) False XLOC_020213
TCONS_00040193 mRNA upstream 66214 9918872 ~ 9923691 (+) False XLOC_020213
TCONS_00040194 mRNA upstream 66687 9922301 ~ 9923218 (+) True XLOC_020213
TCONS_00040197 mRNA downstream 3339 9994833 ~ 10003688 (+) False XLOC_020217
TCONS_00040198 mRNA downstream 3339 9994833 ~ 10006999 (+) True XLOC_020217
TCONS_00040199 mRNA downstream 18798 10010292 ~ 10014369 (+) True XLOC_020218
TCONS_00040200 mRNA downstream 75352 10066846 ~ 10069938 (+) False XLOC_020220
TCONS_00040201 mRNA downstream 75352 10066846 ~ 10071296 (+) False XLOC_020220
TCONS_00040182 other upstream 200101 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 606421 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1203612 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1220512 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1290672 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040207 other downstream 167664 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 502761 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 562234 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 681657 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1671123 11662617 ~ 11674637 (+) True XLOC_020251