RNA id: TCONS_00042072


Basic Information

Item Value
RNA id TCONS_00042072
length 511
lncRNA type read_through
GC content 0.36
exon number 2
gene id XLOC_020221
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10073420 ~ 10097227 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCcataatttactctcccttaaaTGGTTTCAAAACatcaaGTGTTTCTTTACtatgttggacacaaaagaagatactttcaAGAATGTTGATAATGAGCACTGTGAAAAATGCATTCCTTCAGGGCAGCTTTCTAAAGCAGGAATGCATCAAGGCACGCCTGAATCCAATTGTCTGAAGTCAGAAATTTCCTTCTCCTGACTGAATTTAAAAGCCAGCACAGATGTATAATTGGCTGTCTTTGCTATTTTACAATCTTGTGTGTTCAGATTCTGACAGTTATGTAATGAATTTGGCATCTGGAAGCTCAACTTGGGTGTCATTTTGTGTGCACTGTAAATGTACGTTTTATGAACAACGTATTGTAATTTTGATTTCCACTTTCTGGCGAGAAGTAATTGTAGTAAGTAAATATTCACTTAATTATCACCAAAGCTTTCGGTCGTTTGTTGTAGATGAATAAACCCTTGTATTGTCCAAGAAGACAGTCTGAGATGCCTTTGTGCACAAA

Function

GO:

id name namespace
GO:0010872 regulation of cholesterol esterification biological_process
GO:0010873 positive regulation of cholesterol esterification biological_process
GO:0050878 regulation of body fluid levels biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0022610 biological adhesion biological_process
GO:0070527 platelet aggregation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0070831 basement membrane assembly biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0016203 muscle attachment biological_process
GO:0051258 protein polymerization biological_process
GO:0043691 reverse cholesterol transport biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0071711 basement membrane organization biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034109 homotypic cell-cell adhesion biological_process
GO:0034370 triglyceride-rich lipoprotein particle remodeling biological_process
GO:0034372 very-low-density lipoprotein particle remodeling biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0050817 coagulation biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0042060 wound healing biological_process
GO:0043256 laminin complex cellular_component
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005604 basement membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0005178 integrin binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0060228 phosphatidylcholine-sterol O-acyltransferase activator activity molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04080 Neuroactive ligand-receptor interaction
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042070 lncRNA upstream 25632 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042069 lncRNA upstream 83371 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042068 lncRNA upstream 170242 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042067 lncRNA upstream 170367 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00040181 lncRNA upstream 283498 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00041885 lncRNA downstream 63173 10158463 ~ 10164865 (+) False XLOC_020223
TCONS_00040213 lncRNA downstream 119704 10214994 ~ 10222660 (+) False XLOC_020226
TCONS_00042073 lncRNA downstream 121514 10216804 ~ 10222660 (+) True XLOC_020226
TCONS_00042074 lncRNA downstream 205113 10300403 ~ 10354336 (+) False XLOC_020228
TCONS_00042075 lncRNA downstream 205127 10300417 ~ 10354336 (+) False XLOC_020228
TCONS_00040201 mRNA upstream 3569 10066846 ~ 10071296 (+) False XLOC_020220
TCONS_00040200 mRNA upstream 4927 10066846 ~ 10069938 (+) False XLOC_020220
TCONS_00040202 mRNA upstream 5071 10066881 ~ 10069794 (+) True XLOC_020220
TCONS_00040199 mRNA upstream 60496 10010292 ~ 10014369 (+) True XLOC_020218
TCONS_00040198 mRNA upstream 67866 9994833 ~ 10006999 (+) True XLOC_020217
TCONS_00040205 mRNA downstream 34498 10129788 ~ 10141469 (+) True XLOC_020222
TCONS_00040206 mRNA downstream 63212 10158502 ~ 10164533 (+) False XLOC_020223
TCONS_00040208 mRNA downstream 64222 10159512 ~ 10164401 (+) False XLOC_020223
TCONS_00040209 mRNA downstream 68611 10163901 ~ 10164401 (+) True XLOC_020223
TCONS_00040210 mRNA downstream 71117 10166407 ~ 10199014 (+) True XLOC_020224
TCONS_00040182 other upstream 285061 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 691381 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1288572 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1305472 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1375632 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040207 other downstream 63868 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 398965 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 458438 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 577861 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1567327 11662617 ~ 11674637 (+) True XLOC_020251

Expression Profile

//