RNA id: TCONS_00040205


Basic Information

Item Value
RNA id TCONS_00040205
length 1413
RNA type mRNA
GC content 0.54
exon number 8
gene id XLOC_020222
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10129788 ~ 10141469 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGTGATCCCGGTTCAGTTCGGCGGATCTCGCTCATTTAAACCCCTGTCATGCGCCACACACACCGGACAGACAGATGACTTTCAACGGACAAGAGTTTATTGAGCTGCGCGGGCCTGAATGAGATGATGTGGCCTTTAAGTTAGCAGAGCAGCTAAACCTGTTGTGTTTTTCTGTGGAGTAAAACGATGGAGCTCGAGTTTGAACATTAGCCACAGGATGAATCTGAAGAGGTCGCGGAGTGTCGGAGCTTCCCCGCTCAATGGAGTCGGAAAACAAGACGTGGAGAGTAGACGCAGAAAGAAGATGTCTGAGATCACGCAGGCTCTGAGCTGCCGGCCTGTGGACGTTGCGGCTCTGAGACGAATGGCCATCAGTGAAGGAGGTCTAATGACCGACGAGATCAGACGCCTGGTGTGGCCCAAACTGCTCAACGTCTCTGAGGAAAACATACCAGAGGAACTGGATCCTGTCGATCGAGAAAACAACAAAGACTTTAACCAGGTTCTTCTTGATGTTCAGCGGTCACTTAGACGCTTTCCTCCAGGGATGCCGGATGAGCAGCGTGAGGGTCTTCAGGAGGAGCTCACCGATATTATTCTGCGTGTTTTGGTGAAAAACCCTCAGCTGCATTACTATCAGGGTTATCATGACATCGTGGTCACTTTCCTGCTGGTGCTCGGAGAGAGACTCGCCACTGCCCTCGTGGAGAAACTCTCCACACACCACCTCAGGGACTTTATGGACCCCACGATGGACAACACTAAACACATCCTGAACTATCTGATGCCCATCATCGAGAGGGTCAATCCTGAGGTCTTCGACTTCATGCAGCAGGCTGAAGTGGGCACCATATTCGCCCTCAGCTGGCTGATCACCTGGTTCGGGCACGTCCTGTCAGATTTCCGCCACGTGGTTCGGTTGTATGATTTCTTCCTGGCCTGCCATCCGCTCATGCCCATCTACTTCGCTGCAGTGATCGTGTTGCATCGTGAGGAGGAGGTCTTGGACTGTGAGTGTGACATGGCCATGATGCACCACCTCCTGTCCCGCATCCCAGAGGACCTGCCGTATGAAACGCTGATCAGCCGCGCTGGAGATCTGTTCGTGCAGTTTCCTCCATCAGAGCTAGCCAGAGAGCGCAGTCAGCAAACGGCAGTCTCCACATTTAAAGACTTTGAGCTGGCGTCGACGCAGCAGCGGCCGGACGTGGTGCTTCGCCAGAGACGGAAAGAGCAGCAGCAGCGAACACTGGAGGCTCAGCGCGGGACTGTGGCGGTGGTTCAGCCTACGGCACGCCGCTTCATGAGGTTAGCGGTGATGGGTTTGACGGTGGCACTGGGAGCCGCGGCGCTGGCCGTGGTGAATTCAGCTCTGGAATGGGCTCCGAAATTAGACTTACTGTTTCCGTGA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050626-61 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

Ensembl:

ensembl_id ENSDART00000045752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042071 lncRNA upstream 34498 10073420 ~ 10095290 (+) False XLOC_020221
TCONS_00042072 lncRNA upstream 34498 10074865 ~ 10095290 (+) False XLOC_020221
TCONS_00042070 lncRNA upstream 80555 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042069 lncRNA upstream 138294 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042068 lncRNA upstream 225165 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00041885 lncRNA downstream 16994 10158463 ~ 10164865 (+) False XLOC_020223
TCONS_00040213 lncRNA downstream 73525 10214994 ~ 10222660 (+) False XLOC_020226
TCONS_00042073 lncRNA downstream 75335 10216804 ~ 10222660 (+) True XLOC_020226
TCONS_00042074 lncRNA downstream 158934 10300403 ~ 10354336 (+) False XLOC_020228
TCONS_00042075 lncRNA downstream 158948 10300417 ~ 10354336 (+) False XLOC_020228
TCONS_00040203 mRNA upstream 32561 10090673 ~ 10097227 (+) False XLOC_020221
TCONS_00040204 mRNA upstream 37086 10090841 ~ 10092702 (+) True XLOC_020221
TCONS_00040201 mRNA upstream 58492 10066846 ~ 10071296 (+) False XLOC_020220
TCONS_00040200 mRNA upstream 59850 10066846 ~ 10069938 (+) False XLOC_020220
TCONS_00040202 mRNA upstream 59994 10066881 ~ 10069794 (+) True XLOC_020220
TCONS_00040206 mRNA downstream 17033 10158502 ~ 10164533 (+) False XLOC_020223
TCONS_00040208 mRNA downstream 18043 10159512 ~ 10164401 (+) False XLOC_020223
TCONS_00040209 mRNA downstream 22432 10163901 ~ 10164401 (+) True XLOC_020223
TCONS_00040210 mRNA downstream 24938 10166407 ~ 10199014 (+) True XLOC_020224
TCONS_00040211 mRNA downstream 60357 10201826 ~ 10212502 (+) False XLOC_020225
TCONS_00040182 other upstream 339984 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 746304 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1343495 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1360395 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1430555 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040207 other downstream 17689 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 352786 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 412259 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 531682 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1521148 11662617 ~ 11674637 (+) True XLOC_020251

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_08144020_08149228.mRNA True 1329 mRNA 0.53 8 CI01000030 8143888 ~ 8149228 (-)