RNA id: TU1327241


Basic Information

Item Value
RNA id TU1327241
length 3252
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110485141
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30904798 ~ 30962319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAGCTAGCGCGACGCCgcgagcaggagaggaggaggagagaagcgATGGCGGCAACCATTGACATGAATTTCCAAAGCGACCTGATGGCTATCTTTGAGGAGAACTTGTTCTGATGACGAGAGAACCCCCAGAAACTTAACTGCAAAAAGAACACATAATGGAATAATGATTATGGAATGGAAAATTTCTTATGAAATGGAATCTTCTGTATGACATCACAGATGGTGGGGGGGGTAAATGAACCAAGATACAGGACGTGAATTAAACAATCCCCCCGCAGAGCAGAGAGGGTGATCTTCAGCTGGACTGGTCCAGACTGGCGAGATGCTACTGGGCTGTTACCTGCTCTGCTATGCAGCCTCTTTGGAAGTAAGATGCCACATTGAAGGAGCAACATAAACAGGATATTTTCAACCACGTTTGGTGTCGTTTCTCTGGAGATTTGACCCTTGTTGTTGCCCCTGGCAACAAGACATGAGGGAAAGGACTCCTGGTGGTCATGTAATGTCACACCTGTTTGATACTTTCACATGGGACAGAGCAAAGGAGAACAATGTTGTAAACAGGAAGTTAAAGATGATAACAGAAAACACAGTAACGGTGACATGCTCTGAGAAACAAAGTACTGATGCGTATGTACAGACCGAGACCGAGGCGCTCATATAGACTGCCAAGACAGACGTCtttctgataagaggagaggcaGAATAAGTATTTTTATGTGATCTGCTTTTCGTTTTGTTATAGAAAGAACACATGAAAGGAAATGGTGGGGACATGTGTGTATAGAGGGGGAGGGAATTTAACTTCTGACAGTACAGCTTTGCCTTCTGCCTCACTCCTGTCcattgtccacacacacacacagacagtacataggcctatcTCTCCCTTGCCTGGGCATACGAACAAATCAGTAACAACAAAGTATGGGACAGTCCGCCGGCAGCGGGAGGGAGAAAGCGGATTTCTTTTTTCATTATGTAGGATCTACTGTAAAGAGGTATTTTCTTATTCTATGATtactgtttatttgtttgttttttatatattttttttgtttttacccctccctccccaacACACTTCCCCCACCGTCTATGCCAAACCACCATTACCTTTTTAATGCTGAACTCCTCCCActtctccttttttttttttatgcttcTTTGTTcaaataaagtgtttttttttcttaataTATAAATAGATTTTTTCCCCCTTGTCCTCTTCACCCCTCTTCAAACAAAGCATTTAGGTAGTTTTTTTAAGAGGATAAAACCTAATATATGCATTATTCCATCAAGTGTTAATTAATTAAAGAACCATTTGAAGTTGTCATATTTCATGTTTTCTTCCTCATCTGAAGCTGGAGCAAAACATTCTGATCAGTACTAGAGGCAGAGgctcagtcccaaatggcacctgattccctacatagtgcactagtttagtaGTGCACTAAACAAGAGAATAGGCTCCCATTTGGGAGGAAGTCAGAGTCCAGCTGCTTCTAGAGCTATGTCTTGGTTGGTTTGACTCCCGAGTTCACCATCACTGTAACACCTTATTGTGTATTATTGCTCTTAGAGACAGCTAGGAAAGTAGTCATTAATTAATGGCATTTTCCTCTTTGTAGCTGATTCACAAACTATTGAACCAGAGAATCCAATAACTATTACTGAACTGTTTGATTTATAAACTGCGTTGATTCCTCCCTGTTCCTTGCTCGTATATTGTCCTGGAATTTGCGTAGTTAAAATGAAAATGTTACTTTATCCACACTAGCAtactactttaaaaaaatatataaaaaaacagcAATGTATTGGTCATGCAATATGAGTGGTGTGCTGGTATGGTTATTAGAACATATCCAAAGGGTTCTAATCTGGTAGTGAGCCCGCCACTCTACTTTGTCATTTGGGGACAAGGAATGGGATAAGAGGCAAACCTCAAAACATAATTAGTTCTAACAGCAACTTTATTGGGCTCTTATAAGAACAGATGAGACACTACTCATCGATGTAGCTCCATAATGCAGCCAGGATGCAGCATTACTTTTGAACagggtactgtagtgtactatataggaaatagggggcCGTTTGGATGTACCTCCACCCTCCAGACTTTACTAATGCAGAGACTAAAAGAGAGCTCCACCTCCTGGCTAGTCTGTGCGTGAGTCTTGCTGTTAATATTATGACTACAATTAATCAGAGGGAAACTTTTAGCTGTACAAATTTGAGAAATAAGGAAATTGCATAAAATTTGACGACATATGTTCTAGAAAACCCTACAAAAACAGCTCTGATTTCTGTCATTTTTCTTGTTCGATTCTAGTGGATACATGTGAGTTCTAATTCTGTTGGCGTCACAGGTCGAGGGTCACGACGAGTTGACCTCTGACCCGGTCCTCTGCATTTTCTCTTATGGTGTAATTCTCCAGTGCCTGTATTGTTCTAGGATTCTAGTTGGCATATATTACACTTGGGGTGGATACGGAGGGGGAGGTGTAATATTTGATGGGGAGGGAGATTTGGGATAAGCTTGTGTAAAAAGTAAAAGTCAGCATTTTATATTTGACCCAATTAACGATATTCAGGTTTAAATCTAGTTTTAGCTGGACTTCTGTGGTATGAGTGTACACTTGACTCAACTACTTTATAATTTTCAATCAGTACACTTTTAAGTAGACATGTCTCTGTGCCGCGCCACTTTAGCATTTGTGTGTCAGAATGTTTGTGTGGATGAGTGTGTATGTATGATTTTAGTATGTGGCGCAGGGACGCATGTGTCCCTTTGTAGAAAAGCATTTTAAACGGGGATGAAGATTAATATACAAAATGCTACAAGAGAACGAGTTTCTTGGCTAAAGTCAGTCATTTTGATGAATTCCACCATAATGAATAGCCTACATATAATTTTGTTTTGTTAGACAAGTTATGAAAAAGTCAAATACTTTTTCATTCCTTCAAGCCTTTTATTAATTCCTTAATTTTATCCCCATGGTAACTGATGGAAGTTATGTGCCATAGATATGGATTCTTCAGAATGTGCTCAGCAGAGAGTTTGCTTTATTCAggtattttattttgtgttacatTTTTGGTCTTGTTTTTGGGGGGGTTTTGTGTAACATTTTCCTTGATTTATTGTTTGGTATGCGAGTGGTCTGTCGGTCAATGATTAAATCTGTTATGATCATGGAGTAAACTCATCTCTtttatagaaaataaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1327255 lncRNA upstream 59180 30898145 ~ 30898632 (+) True G1163814
TU1327253 lncRNA upstream 105335 30850634 ~ 30852477 (+) True LOC110486099
TU1327236 lncRNA upstream 118362 30838494 ~ 30839450 (+) True G1163799
TU1327222 lncRNA upstream 135099 30822511 ~ 30822713 (+) True G1163785
TU1327220 lncRNA upstream 136398 30821017 ~ 30821414 (+) True G1163783
TU1327295 lncRNA downstream 23645 30985962 ~ 31085331 (+) True G1163854
TU1327366 lncRNA downstream 113141 31075458 ~ 31076511 (+) True G1163914
TU1327415 lncRNA downstream 185963 31148280 ~ 31148666 (+) True G1163962
TU1327443 lncRNA downstream 227660 31189977 ~ 31254788 (+) True G1163989
TU1327532 lncRNA downstream 366435 31328752 ~ 31338410 (+) True G1164069
XR_002468032.2 mRNA upstream 105208 30850580 ~ 30852604 (+) False LOC110486099
XM_036940737.1 mRNA upstream 359109 30579918 ~ 30598703 (+) True LOC110486087
XM_036939734.1 mRNA upstream 405159 30523932 ~ 30552653 (+) True LOC118938065
XM_021557423.2 mRNA upstream 674767 30264043 ~ 30283045 (+) False LOC110486082
XM_021557461.2 mRNA downstream 151464 31113781 ~ 31119681 (+) False LOC110486104
XM_021557463.2 mRNA downstream 151474 31113791 ~ 31119681 (+) False LOC110486104
XM_021557460.2 mRNA downstream 151492 31113809 ~ 31119681 (+) False LOC110486104
XM_021557459.2 mRNA downstream 151576 31113893 ~ 31119681 (+) False LOC110486104
XM_021557462.2 mRNA downstream 151576 31113893 ~ 31119681 (+) False LOC110486104
TU1326020 other upstream 1126516 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 1462910 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 1586865 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 1658156 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 2138364 28818734 ~ 28819448 (+) True G1159924
TU1327390 other downstream 151994 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 1039434 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 1752939 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 2266796 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 2277636 33239953 ~ 33249208 (+) False G1166318

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU400906 True 2335 lncRNA 0.38 2 NC_047617.1 4752487 ~ 4755095 (-)
mexican tetra (Astyanax mexicanus) TU459309 True 786 lncRNA 0.32 2 NW_019172924.1 5258985 ~ 5259851 (-)