RNA id: TU1327255


Basic Information

Item Value
RNA id TU1327255
length 488
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1163814
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30898145 ~ 30898632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggagagtttgggctaaattatagatgggctatgtacaggtgcagtaatctgtgagctgctctgacagctggtgcttaaagctagtagtgagggggataagtgtttccagtttcagagatttttgcagttcgttccagtcataggcagcagagaactggaaggagaggcggccaaagtaagaattggttttgggggtgaccagagagatatacctgctggagcacgtgctacaggtgggtgctgctatggtgaccagcgaggtaagataagggggaactttacctagcagggtcttgtagatgacctggagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacaggtcgcagtggtgggtagtatattatagtattatagtattcagaagctagttagcttatttactggctaatcgttagtactcagctaaccacggtttgtggtcatcggctgtcctttggctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1327253 lncRNA upstream 45668 30850634 ~ 30852477 (+) True LOC110486099
TU1327236 lncRNA upstream 58695 30838494 ~ 30839450 (+) True G1163799
TU1327222 lncRNA upstream 75432 30822511 ~ 30822713 (+) True G1163785
TU1327220 lncRNA upstream 76731 30821017 ~ 30821414 (+) True G1163783
TU1327181 lncRNA upstream 101420 30796501 ~ 30796725 (+) True G1163744
TU1327241 lncRNA downstream 59180 30957812 ~ 30962317 (+) True LOC110485141
TU1327295 lncRNA downstream 87330 30985962 ~ 31085331 (+) True G1163854
TU1327366 lncRNA downstream 176826 31075458 ~ 31076511 (+) True G1163914
TU1327415 lncRNA downstream 249648 31148280 ~ 31148666 (+) True G1163962
TU1327443 lncRNA downstream 291345 31189977 ~ 31254788 (+) True G1163989
XR_002468032.2 mRNA upstream 45541 30850580 ~ 30852604 (+) False LOC110486099
XM_036940737.1 mRNA upstream 299442 30579918 ~ 30598703 (+) True LOC110486087
XM_036939734.1 mRNA upstream 345492 30523932 ~ 30552653 (+) True LOC118938065
XM_021557423.2 mRNA upstream 615100 30264043 ~ 30283045 (+) False LOC110486082
XM_021557424.2 mRNA upstream 615100 30264043 ~ 30283045 (+) True LOC110486082
XM_036940745.1 mRNA downstream 6166 30904798 ~ 30962319 (+) False LOC110485141
XM_036940748.1 mRNA downstream 6166 30904798 ~ 30962319 (+) False LOC110485141
XM_036940749.1 mRNA downstream 6166 30904798 ~ 30962319 (+) False LOC110485141
XM_036940746.1 mRNA downstream 6343 30904975 ~ 30962319 (+) False LOC110485141
XM_036940750.1 mRNA downstream 6344 30904976 ~ 30962319 (+) False LOC110485141
TU1326020 other upstream 1066849 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 1403243 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 1527198 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 1598489 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 2078697 28818734 ~ 28819448 (+) True G1159924
TU1327390 other downstream 215679 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 1103119 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 1816624 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 2330481 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 2341321 33239953 ~ 33249208 (+) False G1166318

Expression Profile