RNA id: TU1327181


Basic Information

Item Value
RNA id TU1327181
length 225
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1163744
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30796501 ~ 30796725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctcggggtttcccctgccatatcagttatgttatactcacagacattattttaacagttttagaaactttagaatgttatgcatatcctagcttctgggcctgagtaacaggcagtttacttatCATCctgacgtgaaaatactgccccctacccaagagaggttaagaacaaattcttattttcgatgatgacctaggaacagtgggttaactgccttgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1327174 lncRNA upstream 3487 30792699 ~ 30793014 (+) True G1163737
TU1327172 lncRNA upstream 21314 30774815 ~ 30775187 (+) True G1163735
TU1327118 lncRNA upstream 33577 30750881 ~ 30762924 (+) True G1163691
TU1327119 lncRNA upstream 34475 30759596 ~ 30762026 (+) True G1163692
TU1327113 lncRNA upstream 45766 30716794 ~ 30750735 (+) True G1163687
TU1327220 lncRNA downstream 24292 30821017 ~ 30821414 (+) True G1163783
TU1327222 lncRNA downstream 25786 30822511 ~ 30822713 (+) True G1163785
TU1327236 lncRNA downstream 41769 30838494 ~ 30839450 (+) True G1163799
TU1327253 lncRNA downstream 53909 30850634 ~ 30852477 (+) True LOC110486099
TU1327255 lncRNA downstream 101420 30898145 ~ 30898632 (+) True G1163814
XM_036940737.1 mRNA upstream 197798 30579918 ~ 30598703 (+) True LOC110486087
XM_036939734.1 mRNA upstream 243848 30523932 ~ 30552653 (+) True LOC118938065
XM_021557423.2 mRNA upstream 513456 30264043 ~ 30283045 (+) False LOC110486082
XM_021557424.2 mRNA upstream 513456 30264043 ~ 30283045 (+) True LOC110486082
XM_021557422.2 mRNA upstream 557255 30177711 ~ 30239246 (+) True LOC110486081
XR_002468032.2 mRNA downstream 53855 30850580 ~ 30852604 (+) False LOC110486099
XM_036940745.1 mRNA downstream 108073 30904798 ~ 30962319 (+) False LOC110485141
XM_036940748.1 mRNA downstream 108073 30904798 ~ 30962319 (+) False LOC110485141
XM_036940749.1 mRNA downstream 108073 30904798 ~ 30962319 (+) False LOC110485141
XM_036940746.1 mRNA downstream 108250 30904975 ~ 30962319 (+) False LOC110485141
TU1326020 other upstream 965205 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 1301599 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 1425554 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 1496845 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 1977053 28818734 ~ 28819448 (+) True G1159924
TU1327390 other downstream 317586 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 1205026 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 1918531 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 2432388 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 2443228 33239953 ~ 33249208 (+) False G1166318

Expression Profile