RNA id: TCONS_00042617


Basic Information

Item Value
RNA id TCONS_00042617
length 2382
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_021436
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4348265 ~ 4357768 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCAGTAAACTTATCCAGTGGTTCATTTAAGTCATCTCATAGAAGTGCAGCTGCTTAAAAGAGTAATGGAGACTAAAGTAAATCTTAAAACTAAGTGTGGGACTGATCTCGAGTCTGAGATGGATGAGGATATTGAGCGAACAAAGAGCAAATGGACATCAGCAGAGGATGAAAGTCTTGCAGCCCTGGTGGGGAAGTATGGAAGGAGACAGTGGGAACTGATATCATGCTCTCTACCTCTCATTCAGCTGGTGTCCTTGTATGGTGACAAGTCATGGAGCATAATTTCAAAGAACCTAAAAGGGCGAAGAGGCAAGCAGTGCAGAGAGCGATGGCACAATCATCTGGACCCGTCTGTCATCAAGACACCCTGGACGGCAGCGGAGGATCTAATAATCATAAAATGCCATTGTTTGCTGGGATCCCGTTGGGCACAAATAGCAAAGTTTCTCCCAGGAagGACTGATAATTCGATCAAGAACCATTGGTATTCCACCTTAAAGCGTAAAATGGAGAGGGGCACCTACAAGATGGAGAGTCTTGATTTGAGTGATCTTGGACACCACCAGAAATCCAAGGAAACATCTACTTCGTCAAGTCCTGAAAAGTTGAAGAGCACACCAGAACCATTGTCTAAAACGAAACCGACGAAGAGCATGTTTTTAGAAAACAGCCTGAAGGCCAACGGTCCGCCCCTCTACAATTGCTCCTCTTCACCCTCCAGCTCCAGCAGCCCTCCCACTGTGCCCCCTCAACATAAAGCATATGTTGATGATGTTTTGCAAATGATTGCTGAGGACATGCTACCGCTAAACTTTTGTGAAGGCTGTGGGTTTCGTAAATTCATGAGTTCCGTTGGCCCTCAGCACCCACAGCTCTCGCAGCAGATGATAGCGTCACACCTGTATAATGAAGTGGAGAAGACCATCAAACCTCGGCTGATCCGGCAGCTCAGAAACTGCATATCTCTGAGCGTAGGCCATAATGTCGTTCACGTCACTGCCGACATCTGGGCGAACGAACACACAGAAACTCTTCTAGCCGTCCAGTTGCACTTTCTCGATGACGACTGGAACCTTCACAGGCCTACTGTGGCTTTTCGTCACTTGTCGAGTAAAGAATTGAATACAACAAGAATTGGCGAAGTTGAATCGGTTCTGTTAAGCTACGGGCTTTTCCCCCATAACATTGGTTATAGTATGATCCACGAAGCCAAGAACACTATTTCTACACACGATCTCTTCTGTGACTACAAAATCATGTATTCTGCACAGAAGAACGATCCGGACGAAGATGAATTATTGCGTTTTCTTGACGATCAGGTCGCCATCGATGATTTCTCCATAGCTGAGATGTCATCCACCAAACATCTGGACTGCATAACGACTCTGCTTCATTGCGTAATAAAGGGCGCATTGAGGAAGTCAAGAGTGGTTGAGCGAATACTTTTTGAGGTACAAAGTGTAGTGTCTTTTTTTCGCCGCAGTCCCTACTGGCTAGATGTTCTTACCAAGAAGTGTAAGCTCTCGCTATGCGGCTCTTACAGCACAAGTAGTCTTACCTGGAACTCTACCATCAGTATCATTCGAGAGATGATGCAGGAGTCAGTTTGGGACACCGTGATGGCTGTTCTGATTCAGGCACGCACCGAGGCAAACCACTGTCACATCTCTCCACCAGCAATTCATGTTGCGCGAGAGCAAGTCGTGGATCTGGTTACCTTGCTAGAGCCTTTTGAAGAGGTGGTCCAGTTGCTTCAGGATGATGGCATAACCCTGTCTCTCATCATCCCTTCCATCATCGGACTCGATAAAACACTAGAGATCAAGGACACAAAGTTTAGCCTCTTTTGCTCAGCCTTGCGCTGTGGACTTCGTACTTACTTCCAGCCTCTAATATTGCGAAGCGATCTGTTGCTAGCCACCGTCCTGGACCCACGAATTAAGCTGCAACCCTTCGACTGTGAAAAAGAGCAATTCAAAAGCACCTTGCTGTTTGTTCCTTCTAAACAGCGCGTGTCTTCGGTTGTAGAGTCGGCATTAGGGGACGCATACACTGCTGCAGAAATGAGCTGTGACAAAACTGCGGATTTACAGTCGTCAATAGTGCAGGAGCTGCATCATTATTTATCAGAACCCTTGGCGGATGGCAGCGTTTCTTTACAGGACTTCTGGAAAGGAGCGGCACGCTTCTCTCAGCTACAAAGCGTTTGCCGGACACTGTTGGCGGTCCCGGCTTCTTCAGGAGGATTTCGGAGACTGTTTCCTCTAGCGTCTCGTATTGTTCGTGCTCAGAGAAGCCGGCTGCCGCAGCATACGACAGAAAGACTCCTGCTGTATCGAGAGTCTCTGAAGAACAGCGGCAGAAGTGAAAAACAttga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-529 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in mitotic cell cycle and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in dorsal aorta; hematopoietic stem cell; and intermediate cell mass of mesoderm. Orthologous to human MYBL2 (MYB proto-oncogene like 2).

Ensembl:

ensembl_id ENSDART00000190593

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042608 lncRNA upstream 69790 4273916 ~ 4281107 (+) True XLOC_021432
TCONS_00042603 lncRNA upstream 406163 3939908 ~ 3944734 (+) False XLOC_021427
TCONS_00044653 lncRNA upstream 407654 3942021 ~ 3943243 (+) True XLOC_021427
TCONS_00044772 lncRNA upstream 407692 3940520 ~ 3943205 (+) False XLOC_021427
TCONS_00042602 lncRNA upstream 408552 3939908 ~ 3942345 (+) False XLOC_021427
TCONS_00042619 lncRNA downstream 15681 4373336 ~ 4380531 (+) False XLOC_021438
TCONS_00042621 lncRNA downstream 15710 4373365 ~ 4380765 (+) True XLOC_021438
TCONS_00042625 lncRNA downstream 201909 4559564 ~ 4572025 (+) False XLOC_021441
TCONS_00044773 lncRNA downstream 201963 4559618 ~ 4600418 (+) False XLOC_021441
TCONS_00044774 lncRNA downstream 225986 4583641 ~ 4600418 (+) False XLOC_021441
TCONS_00042613 mRNA upstream 6306 4324645 ~ 4344591 (+) False XLOC_021435
TCONS_00042614 mRNA upstream 6316 4324673 ~ 4344581 (+) True XLOC_021435
TCONS_00042611 mRNA upstream 14439 4324625 ~ 4336458 (+) False XLOC_021435
TCONS_00042612 mRNA upstream 15161 4324645 ~ 4335736 (+) False XLOC_021435
TCONS_00042610 mRNA upstream 32479 4299887 ~ 4318418 (+) True XLOC_021434
TCONS_00042618 mRNA downstream 4808 4362463 ~ 4367415 (+) True XLOC_021437
TCONS_00042620 mRNA downstream 15705 4373360 ~ 4390318 (+) False XLOC_021438
TCONS_00042622 mRNA downstream 56509 4414164 ~ 4433220 (+) False XLOC_021439
TCONS_00042623 mRNA downstream 56688 4414343 ~ 4433220 (+) True XLOC_021439
TCONS_00042624 mRNA downstream 125428 4483083 ~ 4557964 (+) True XLOC_021440
TCONS_00042596 other upstream 615888 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 3908545 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 3938238 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042509 other upstream 4037578 309063 ~ 313319 (+) False XLOC_021378
TCONS_00042508 other upstream 4101797 240604 ~ 249100 (+) True XLOC_021377
TCONS_00042666 other downstream 1919520 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042675 other downstream 2468033 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042706 other downstream 4949919 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 5260558 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 5369755 9727410 ~ 9727432 (+) True XLOC_021494

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00003875 True 3616 mRNA 0.43 16 CM030121.1 22790248 ~ 22801229 (-)