RNA id: TCONS_00042622


Basic Information

Item Value
RNA id TCONS_00042622
length 1594
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_021439
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4414164 ~ 4433220 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACCGGCACATCTGCTGTACCTGTGCCGCTATGAAGACTCTCCGTACACTGGATACACCTTGAAGGTGCACTGCATTCACGAGCACAGCTGGACATCAAACCTGTTACAGACTGACTCTGAAAGACTCTCTATTCAAACTGAAGATCCAGCTTCTCGTTTTACAACACATTACCATCATGAGCAGAAAAACACGACGCTGGATGTTTCACATTTTTCTTTGTCTCGGAATAATCTACTTGAAAATGGGGTGAGGATCAAACACGAACGCGCTGTACATCTTATTATGTTGGAGTAATGTACATCATATTTTTGAAGAATGCATACAGTTACTATATTTTGTCAATAGTTTTGCAAGTTTAACTTCAACACTGAGTCAACACAATAATGCGACAACGAAGAAAAAGACACTTATTGTTGTATGCTTTCCAAACGCACTGCTGCGCGCGCTCGTTGCGGTGCGCGCTCGTGCCCTGAAGCCCATCTCCAGACTCTTCcctgatgtctttttttttttttttttttttgcatcccaTATTTCGCAtgcatttgaatatttattaGATAAGGAAGTGTTGATATATTCATACGTAGTTCTGTGGTCATTTGTAGGGGTTTCTCCACCGTGTTGGCGCTGGGAGCGAGCATCATATGCAACAAGATCCCCGGACTGGCGCCCAGGCAGCGGATCATCTGCCAGAGCCGGCCGGACGCGATCATCGTGATCGGAGAGGGCGCACAGATGGGCATCAACGAGTGCCAATTTCAGTTCAAGCACGGCCGCTGGAACTGCTCCGCGCTCGGAGAGAGGACCGTCTTCGGAAAAGAGTTGAAAGTGGGCAGTAAAGAGGCTGCTTTCATGTACGCCATCATCGCAGCAGGAGTGGCTCACGCCATCACATCGGCCTGTACGCGGGGAAACCTCAGCGAATGCAGCTGCGACAAAGACAAACAGGGCTTCTATGCTCATGACAATGGCTGGAAATGGGGAGGCTGTTCGGCAGACGTCCGATACGGCCTGGGCTTCTCCAAAGTTTTTATGGATGCTAAAGAGATAAAACACAGTGCCAGGACTCTTATGAACCTGCATAACAATGAAGTAGGACGGAAGGTTCTGGAGAGGAACATGCGTCTGGAGTGTAAATGTCATGGCGTGTCTGGCTCCTGTGCCACCAGAACCTGCTGGACGACCCTGCCCAAGTTTCGAGAGCTGGGATACATCCTCAAAGACAAATACACCAGCGCTATCCATGTGGAGCCGGTGAAAGCCACACGCCACAAACGACCAACCTTTCTCAAGATCAAAAAACCATACTCATACCGCAAGCCCATGGACACAGACCTGGTGTACATCGAAAAATCCCCCAACTACTGCGAAGCGGACCTGCGCTCCGGCAGCATCGGGACTCAGGGGCGTGTTTGCAATAAGACTCTGATGCACCATCCCAACGGCTGTGACCTGATGTGTTGTGGCCGAGGGTACAACACGCACCAGTATTCACGTGTGTGGCAATGCAACTGCAAGTTCTTCTGGTGCTGTTACGTCAAATGCAACACGTGCAGCGAGAGGACAGAGGTGTACACCTGTAAATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000192762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042621 lncRNA upstream 33399 4373365 ~ 4380765 (+) True XLOC_021438
TCONS_00042619 lncRNA upstream 33633 4373336 ~ 4380531 (+) False XLOC_021438
TCONS_00042608 lncRNA upstream 133057 4273916 ~ 4281107 (+) True XLOC_021432
TCONS_00042603 lncRNA upstream 469430 3939908 ~ 3944734 (+) False XLOC_021427
TCONS_00044653 lncRNA upstream 470921 3942021 ~ 3943243 (+) True XLOC_021427
TCONS_00042625 lncRNA downstream 126344 4559564 ~ 4572025 (+) False XLOC_021441
TCONS_00044773 lncRNA downstream 126398 4559618 ~ 4600418 (+) False XLOC_021441
TCONS_00044774 lncRNA downstream 150421 4583641 ~ 4600418 (+) False XLOC_021441
TCONS_00044654 lncRNA downstream 696762 5129982 ~ 5140354 (+) False XLOC_021448
TCONS_00042639 lncRNA downstream 699219 5132439 ~ 5141915 (+) False XLOC_021448
TCONS_00042620 mRNA upstream 23846 4373360 ~ 4390318 (+) False XLOC_021438
TCONS_00042618 mRNA upstream 46749 4362463 ~ 4367415 (+) True XLOC_021437
TCONS_00042615 mRNA upstream 56396 4348265 ~ 4357768 (+) False XLOC_021436
TCONS_00042616 mRNA upstream 56509 4348479 ~ 4357655 (+) False XLOC_021436
TCONS_00042617 mRNA upstream 56509 4350897 ~ 4357655 (+) True XLOC_021436
TCONS_00042624 mRNA downstream 49863 4483083 ~ 4557964 (+) True XLOC_021440
TCONS_00042626 mRNA downstream 150527 4583747 ~ 4671187 (+) False XLOC_021441
TCONS_00042627 mRNA downstream 212974 4646194 ~ 4677500 (+) True XLOC_021441
TCONS_00042628 mRNA downstream 256406 4689626 ~ 4692550 (+) True XLOC_021442
TCONS_00042629 mRNA downstream 276387 4709607 ~ 4747271 (+) False XLOC_021443
TCONS_00042596 other upstream 679155 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 3971812 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 4001505 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042509 other upstream 4100845 309063 ~ 313319 (+) False XLOC_021378
TCONS_00042508 other upstream 4165064 240604 ~ 249100 (+) True XLOC_021377
TCONS_00042666 other downstream 1843955 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042675 other downstream 2392468 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042706 other downstream 4874354 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 5184993 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 5294190 9727410 ~ 9727432 (+) True XLOC_021494

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000150_00244377_00257297.mRNA True 1305 mRNA 0.50 4 CI01000150 244137 ~ 257297 (-)