RNA id: TCONS_00042778


Basic Information

Item Value
RNA id TCONS_00042778
length 575
RNA type mRNA
GC content 0.58
exon number 4
gene id XLOC_021538
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14432323 ~ 14541590 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAAGTGAGCGATCATCGCAGCCTCTGCAAACTCAATCAGAGTAGGCGGCGTTGCGCGCTCCACAGCAGACGACCCGAGAGCCCGAGCCCGGCCGCGATGCTCCTGCTGCCGCTGCGTGCGCTGGAGGAGAGCTGAGGAGCGCTGGATCATGCCGGAGAACAAGACTTGTCAGTGAGGATGGCAGGGATGCTGCGCGCCGCATCAGTCTCTTTGGCTCTGTGAAACGCACGGTGCAGTGGACGAGCCCTTCGGCaggacctgtgtgtgtgtgtatgtgtgtgtcttgaGCTCAGGGGAATGTTTTCAGATCTCCCGAAGGTGCTGATTCTGGGCGCCATCGCAGCCGCCTCTGCCTTTGTGGTCACCATCCTAATCGTCCTGGTGTGTGTGGGGTGTCAGAGAAAAAGCAAGACCAAACATGGCCATGCCAATGGAGCGAGTCAGAGAATGGAAACGGCTGCTCTGCGGCAGTCCAAGCTGAACTCAATGAGTAAATCTGACACCCGCCTGCATGACATGCAAAGGCTGCCCTGCAATGCCAACGGTAAGACAAACACAGACACCGAACTGCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000178553

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044797 lncRNA upstream 197316 14233725 ~ 14235007 (+) True XLOC_021536
TCONS_00042774 lncRNA upstream 290088 14097508 ~ 14142235 (+) False XLOC_021534
TCONS_00044796 lncRNA upstream 491045 13928339 ~ 13941278 (+) False XLOC_021533
TCONS_00044795 lncRNA upstream 581831 13844754 ~ 13850492 (+) True XLOC_021532
TCONS_00044794 lncRNA upstream 584619 13844557 ~ 13847704 (+) False XLOC_021532
TCONS_00044660 lncRNA downstream 936594 15478184 ~ 15478737 (+) True XLOC_021543
TCONS_00044661 lncRNA downstream 937155 15478745 ~ 15483453 (+) False XLOC_021544
TCONS_00042787 lncRNA downstream 937491 15479081 ~ 15483879 (+) False XLOC_021544
TCONS_00042788 lncRNA downstream 940350 15481940 ~ 15483879 (+) True XLOC_021544
TCONS_00044662 lncRNA downstream 1208162 15749752 ~ 15756516 (+) True XLOC_021545
TCONS_00042777 mRNA upstream 162008 14269311 ~ 14270315 (+) True XLOC_021537
TCONS_00042776 mRNA upstream 201817 14217508 ~ 14230506 (+) True XLOC_021535
TCONS_00042775 mRNA upstream 252016 14097508 ~ 14180307 (+) True XLOC_021534
TCONS_00042773 mRNA upstream 499705 13928346 ~ 13932618 (+) True XLOC_021533
TCONS_00042772 mRNA upstream 609681 13814978 ~ 13822642 (+) True XLOC_021531
TCONS_00042781 mRNA downstream 48893 14590483 ~ 14731481 (+) False XLOC_021540
TCONS_00042780 mRNA downstream 48893 14590483 ~ 14731481 (+) False XLOC_021540
TCONS_00042782 mRNA downstream 49177 14590767 ~ 14596286 (+) False XLOC_021540
TCONS_00042783 mRNA downstream 132332 14673922 ~ 14731481 (+) False XLOC_021540
TCONS_00042784 mRNA downstream 154453 14696043 ~ 14731892 (+) True XLOC_021540
TCONS_00042770 other upstream 828003 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042766 other upstream 989601 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042749 other upstream 2213948 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 2281656 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042743 other upstream 2348652 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042786 other downstream 811543 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 1208428 15750018 ~ 15751546 (+) True XLOC_021546
TCONS_00042790 other downstream 1815118 16356708 ~ 16357229 (+) True XLOC_021553
TCONS_00042792 other downstream 1903371 16444961 ~ 16446040 (+) True XLOC_021556
TCONS_00042812 other downstream 2317327 16858917 ~ 16859033 (+) True XLOC_021565

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_01626896_01630224.mRNA True 734 mRNA 0.57 3 CI01000021 1626862 ~ 1630224 (-)