RNA id: TCONS_00042780


Basic Information

Item Value
RNA id TCONS_00042780
length 1934
RNA type mRNA
GC content 0.54
exon number 9
gene id XLOC_021540
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14590483 ~ 14731892 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTTTTTAGAAAGTACGTCAATTTTTACCGGTGTTTTTTTTATCGTCTCCCTCTTCCTCTCTGTCTATGTACCGGCCGGCAAACCATGCAGACACACCTCCTAAACTCTCAAAAAAAAAGCCAACCCGACGTTTCCCGAACAGCCAATCAGCTGCAGCGCAGTGATGGCCGCGTGCCTAAATAGAATGTTTATGTACCGCGAGAGCCAATCGGAATCAATGAGGAGCGGGCCGAGCGAATCTCGCCTGGCTGCACGCGCAGGATAGAGTGGGCGTGGCGTCGGGCGAGAGAGAAAAGCAAAACAATCATTTTTATCCCCTTTACCGGCTGCTTTTAGGGTCCGTAGTGAAATACGCTCTCAGCAGGGAGTCGTAGTCCACACAACACTGTTAAATGCATCTTATCCCGCTTTGCACTAAAATCTACCGACAGCTGGTGATTTTGCTTTAGTTGTATTTCATCCAGGTCGAAAATGACTTCCAAGCGCCTTCTCGAGCCGCAGCGAGCCGGCGACTGCACGCCCGAGGGGGGCTGCACCGGCCAGCGAGAGCCTGTCACTGGAAAAGCGTTCAAAACAAACACGCAGCTGCACGAAGGCGCTATAAGGAATCTTAGCAAGGAAATCTCTCAAAACGGACATTATCATACCTCAACGAGGCACTACATTCATAAGAAATTTGCATGTGGCAGAGAGGAGGAGGAGCCGAGTTCAGGTGGACTCCTTAAACATGGCTGCCCTGCTCATCGCCTGGTCCTCAACGGCTTCAGAGTACAAGACCAAACCCAAGTAGAGGCTCGAAGCCCAGTGAGAGGCCCTGGAGAGCCAGCCTGTCGTCTGCCATCTCCTGAGATGCCTCATCCAAACACGTCCTCTATCATCCCCGTACCACACGACAGGAGTCCTTCTGGTCATGCTGATAAAGAAGTAATGGCCGCCACCGTCCTGACCACACTGTCCACCAGCCCGTTGGTGCTCAACCCTTCTTCCAGCGCCTCAGGTGTAGATCTGGCTGGTAAAGCCTGGAAAGAGAGTCTGTCTGCCAGCTACAGCAGCTCCACCAGTGGAAACTGGAGTTGGGATGCCAGTGACCAATCAGTGCCCTCCACGCCATCACCGCCGCTCTCCAATGACACGGGCAAGAGCTTCCTGCTGTCCTGCCAGAGCGACGACAACAATGAAGAGAGTGAGAGCACACACTTCCTGTTCGAGGACCCCATCCCTCGCAAACGAAAGAACTCCATGAAGGTGATGTTTAAGTGTCTGTGGAAGAACTGTGAAAAAGTCCTCAGCACCTCCTCAGGGATCCAGCGCCACATCCGCACCGTCCACTTGGGgCGAAATGGAGATTCTGACTACAGCGATGGCGAGGAGGATTTCTACTACTCTGAAATCGAGGTGAACATGGACACTCTTTCGGAGGGTCTGTCTAACCTCACGCCCACGTCTCCGACCACGTCCGGGCCGCCGCCTGTGTTCCCCGTCCTGACCTGTGATGTGTCCCGAACTGAACCTGCCAACGTGATCCACACCCCGCTCAGTCAATCAGCACCCTCGGCACTGTGCCATATCCGCACTGACCACGCTTACCAGGCTACAACCCCTGTCAGCATTCCCAGCATGCCTTCATGCCCGCCTCACAGTGAGGATAGGATTAGTGTATCCTGGCAGTCACCCCCTGTCATTTATAAAGGTCCACCGggccCGATGACTCAAATCCGCACTGTCAGCATCGGTGAGAAGAGACAACCTGTTAACCACACCACTGTCAGCAAAACACACACCAACAGCACCTCCACTTCCAAACCCACCACTGGAACCAGGAAACCCCGCGGTGAAGCCAAGAAATGTCGGAAGGTGTATGGCATGGAGAAGAAGGACCTATGGTGCACAGCGTGCCGCTGGAAGAAGGCCTGCCAGCGCTTCACTGACTGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-83 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SLC2A4RG (SLC2A4 regulator).

Ensembl:

ensembl_id ENSDART00000088359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044797 lncRNA upstream 355476 14233725 ~ 14235007 (+) True XLOC_021536
TCONS_00042774 lncRNA upstream 448248 14097508 ~ 14142235 (+) False XLOC_021534
TCONS_00044796 lncRNA upstream 649205 13928339 ~ 13941278 (+) False XLOC_021533
TCONS_00044795 lncRNA upstream 739991 13844754 ~ 13850492 (+) True XLOC_021532
TCONS_00044794 lncRNA upstream 742779 13844557 ~ 13847704 (+) False XLOC_021532
TCONS_00044660 lncRNA downstream 746703 15478184 ~ 15478737 (+) True XLOC_021543
TCONS_00044661 lncRNA downstream 747264 15478745 ~ 15483453 (+) False XLOC_021544
TCONS_00042787 lncRNA downstream 747600 15479081 ~ 15483879 (+) False XLOC_021544
TCONS_00042788 lncRNA downstream 750459 15481940 ~ 15483879 (+) True XLOC_021544
TCONS_00044662 lncRNA downstream 1018271 15749752 ~ 15756516 (+) True XLOC_021545
TCONS_00042778 mRNA upstream 48893 14432323 ~ 14541590 (+) True XLOC_021538
TCONS_00042777 mRNA upstream 320168 14269311 ~ 14270315 (+) True XLOC_021537
TCONS_00042776 mRNA upstream 359977 14217508 ~ 14230506 (+) True XLOC_021535
TCONS_00042775 mRNA upstream 410176 14097508 ~ 14180307 (+) True XLOC_021534
TCONS_00042773 mRNA upstream 657865 13928346 ~ 13932618 (+) True XLOC_021533
TCONS_00042785 mRNA downstream 40498 14771979 ~ 14803801 (+) True XLOC_021541
TCONS_00042791 mRNA downstream 1699078 16430559 ~ 16525698 (+) False XLOC_021555
TCONS_00042793 mRNA downstream 1738049 16469530 ~ 16525698 (+) True XLOC_021555
TCONS_00042795 mRNA downstream 1889320 16620801 ~ 16642181 (+) False XLOC_021557
TCONS_00042794 mRNA downstream 1889320 16620801 ~ 16642181 (+) False XLOC_021557
TCONS_00042779 other upstream 119912 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042770 other upstream 986163 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042766 other upstream 1147761 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042749 other upstream 2372108 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 2439816 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042786 other downstream 621652 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 1018537 15750018 ~ 15751546 (+) True XLOC_021546
TCONS_00042790 other downstream 1625227 16356708 ~ 16357229 (+) True XLOC_021553
TCONS_00042792 other downstream 1713480 16444961 ~ 16446040 (+) True XLOC_021556
TCONS_00042812 other downstream 2127436 16858917 ~ 16859033 (+) True XLOC_021565

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_01535275_01607587.mRNA True 1446 mRNA 0.56 9 CI01000021 1535275 ~ 1607587 (-)