Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042785 |
| length | 2964 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 25 |
| gene id | XLOC_021541 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 14771979 ~ 14803801 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | biological_process |
| GO:0071036 | nuclear polyadenylation-dependent snoRNA catabolic process | biological_process |
| GO:0071037 | nuclear polyadenylation-dependent snRNA catabolic process | biological_process |
| GO:0071038 | nuclear polyadenylation-dependent tRNA catabolic process | biological_process |
| GO:0071039 | nuclear polyadenylation-dependent CUT catabolic process | biological_process |
| GO:0071040 | nuclear polyadenylation-dependent antisense transcript catabolic process | biological_process |
| GO:0071044 | histone mRNA catabolic process | biological_process |
| GO:0071048 | nuclear retention of unspliced pre-mRNA at the site of transcription | biological_process |
| GO:0071051 | polyadenylation-dependent snoRNA 3'-end processing | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0000176 | nuclear exosome (RNase complex) | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0008408 | 3'-5' exonuclease activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0000175 | 3'-5'-exoribonuclease activity | molecular_function |
| GO:0003727 | single-stranded RNA binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-781 | Predicted to enable 3'-5'-exoribonuclease activity and single-stranded RNA binding activity. Predicted to be involved in RNA catabolic process and ncRNA 3'-end processing. Predicted to act upstream of or within RNA processing. Predicted to be part of nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC10 (exosome component 10). |
| ensembl_id | ENSDART00000137410 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044797 | lncRNA | upstream | 536972 | 14233725 ~ 14235007 (+) | True | XLOC_021536 |
| TCONS_00042774 | lncRNA | upstream | 629744 | 14097508 ~ 14142235 (+) | False | XLOC_021534 |
| TCONS_00044796 | lncRNA | upstream | 830701 | 13928339 ~ 13941278 (+) | False | XLOC_021533 |
| TCONS_00044795 | lncRNA | upstream | 921487 | 13844754 ~ 13850492 (+) | True | XLOC_021532 |
| TCONS_00044794 | lncRNA | upstream | 924275 | 13844557 ~ 13847704 (+) | False | XLOC_021532 |
| TCONS_00044660 | lncRNA | downstream | 674383 | 15478184 ~ 15478737 (+) | True | XLOC_021543 |
| TCONS_00044661 | lncRNA | downstream | 674944 | 15478745 ~ 15483453 (+) | False | XLOC_021544 |
| TCONS_00042787 | lncRNA | downstream | 675280 | 15479081 ~ 15483879 (+) | False | XLOC_021544 |
| TCONS_00042788 | lncRNA | downstream | 678139 | 15481940 ~ 15483879 (+) | True | XLOC_021544 |
| TCONS_00044662 | lncRNA | downstream | 945951 | 15749752 ~ 15756516 (+) | True | XLOC_021545 |
| TCONS_00042784 | mRNA | upstream | 40087 | 14696043 ~ 14731892 (+) | True | XLOC_021540 |
| TCONS_00042781 | mRNA | upstream | 40498 | 14590483 ~ 14731481 (+) | False | XLOC_021540 |
| TCONS_00042780 | mRNA | upstream | 40498 | 14590483 ~ 14731481 (+) | False | XLOC_021540 |
| TCONS_00042783 | mRNA | upstream | 40498 | 14673922 ~ 14731481 (+) | False | XLOC_021540 |
| TCONS_00042782 | mRNA | upstream | 175693 | 14590767 ~ 14596286 (+) | False | XLOC_021540 |
| TCONS_00042791 | mRNA | downstream | 1626758 | 16430559 ~ 16525698 (+) | False | XLOC_021555 |
| TCONS_00042793 | mRNA | downstream | 1665729 | 16469530 ~ 16525698 (+) | True | XLOC_021555 |
| TCONS_00042795 | mRNA | downstream | 1817000 | 16620801 ~ 16642181 (+) | False | XLOC_021557 |
| TCONS_00042794 | mRNA | downstream | 1817000 | 16620801 ~ 16642181 (+) | False | XLOC_021557 |
| TCONS_00042797 | mRNA | downstream | 1830150 | 16633951 ~ 16642181 (+) | False | XLOC_021557 |
| TCONS_00042779 | other | upstream | 301408 | 14468003 ~ 14470571 (+) | True | XLOC_021539 |
| TCONS_00042770 | other | upstream | 1167659 | 13604218 ~ 13604320 (+) | True | XLOC_021527 |
| TCONS_00042766 | other | upstream | 1329257 | 13442608 ~ 13442722 (+) | True | XLOC_021525 |
| TCONS_00042749 | other | upstream | 2553604 | 12213967 ~ 12218375 (+) | True | XLOC_021513 |
| TCONS_00042745 | other | upstream | 2621312 | 12134839 ~ 12150667 (+) | False | XLOC_021511 |
| TCONS_00042786 | other | downstream | 549332 | 15353133 ~ 15353249 (+) | True | XLOC_021542 |
| TCONS_00042789 | other | downstream | 946217 | 15750018 ~ 15751546 (+) | True | XLOC_021546 |
| TCONS_00042790 | other | downstream | 1552907 | 16356708 ~ 16357229 (+) | True | XLOC_021553 |
| TCONS_00042792 | other | downstream | 1641160 | 16444961 ~ 16446040 (+) | True | XLOC_021556 |
| TCONS_00042812 | other | downstream | 2055116 | 16858917 ~ 16859033 (+) | True | XLOC_021565 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000021_01771612_01785627.mRNA | True | 2863 | mRNA | 0.48 | 22 | CI01000021 | 1771389 ~ 1785666 (+) |
