RNA id: TU1360275


Basic Information

Item Value
RNA id TU1360275
length 1004
lncRNA type intronic
GC content 0.43
exon number 3
gene id G1192380
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59722063 ~ 59725151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTCTGTTCTTCCTCTCTGATTCTGaactccttctctttctcagtcttctgtactctctctttctatttctctccctctttctcagtcttctgtactccctctttctatttctctccctctttctcagtcttctgtactctctctttctctccctctttctcagtcttctgttctctctctttctctccctctttctcagtcttctgtattctctttctctttctctccctctttctcagtcttctgtattctctttctctttctctccctatttctcagtcttctgttctctctctttctcgccctctttctcagtcttctgtactctctctttctatttctcgccctctttctcagtcttctgtactctctctttctatttctctccctctttctcagtcttctgtactctctctttctctccctctttctcagtcttctgtactctctctttctctccctctttctcagtcttctgttctctttctctcccgatttctcagtcttctgtactctctctttctatttctctccctctttctcagtcttctgtactctctctttctctccctctttgtcagtcttctgttctctctttctctccctctttctcagtcttctgtactctctctttctctccctctttctcagtcttctgttctctctctttctctccctatttctcagtcttctgtactctctctttctctccctctttctcagtcttctgttctctctttctctccctctttctcagtcttctgtactctctttctatttctctccctctttctcagtcttctgttctctctttctctccctctttctcagtcttctgtactctctttctatttctctccctctttctcagtcttctgtactctctctttctatttctctccctctttctcagtcttctgtactctctctttctctccctctttctcagtcttctgtactctctctttctctccctctttctcagtcttctgttctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1360239 lncRNA downstream 89722 59632023 ~ 59632924 (-) True G1192355
TU1360241 lncRNA downstream 91191 59630994 ~ 59631455 (-) True G1192356
TU1360243 lncRNA downstream 95968 59625821 ~ 59626678 (-) True G1192357
TU1360233 lncRNA downstream 120359 59600162 ~ 59602287 (-) True G1192349
TU1360186 lncRNA downstream 195798 59523924 ~ 59526848 (-) True LOC118938337
TU1360282 lncRNA upstream 11397 59736548 ~ 59739126 (-) True G1192387
TU1360288 lncRNA upstream 26489 59751640 ~ 59752325 (-) True G1192391
TU1360297 lncRNA upstream 36868 59762019 ~ 59764877 (-) True G1192396
TU1360301 lncRNA upstream 50553 59775704 ~ 59776419 (-) True G1192400
TU1360279 lncRNA upstream 55859 59781010 ~ 59783540 (-) True G1192384
XM_036941763.1 mRNA downstream 73732 59644584 ~ 59648914 (-) True LOC110487009
XM_036941755.1 mRNA downstream 179527 59523790 ~ 59543119 (-) False LOC118938337
XM_036941752.1 mRNA downstream 179528 59523790 ~ 59543118 (-) False LOC118938337
XM_036941754.1 mRNA downstream 179528 59523790 ~ 59543118 (-) False LOC118938337
XM_036941751.1 mRNA downstream 205706 59481481 ~ 59516940 (-) True LOC110487012
XM_036941762.1 mRNA upstream 196326 59921477 ~ 59932329 (-) True LOC110512532
XM_036941764.1 mRNA upstream 212960 59938111 ~ 59958206 (-) True LOC110516349
XM_036941781.1 mRNA upstream 467761 60192912 ~ 60196720 (-) False LOC118938340
LOC110486988 mRNA upstream 535569 60260720 ~ 60262829 (-) True LOC110486988
XM_036941778.1 mRNA upstream 549574 60274725 ~ 60297665 (-) False LOC110486987
TU1359939 other downstream 252355 59469529 ~ 59470291 (-) False LOC110516720
TU1359926 other downstream 408363 59312129 ~ 59314283 (-) True LOC110485268
TU1360061 other downstream 446797 59275141 ~ 59275849 (-) True G1192205
TU1360011 other downstream 601490 59120012 ~ 59121156 (-) True G1192158
TU1359914 other downstream 813414 58906153 ~ 58909232 (-) True G1192082
TU1360475 other upstream 467862 60193013 ~ 60196843 (-) True LOC118938340
TU1360470 other upstream 480631 60205782 ~ 60208270 (-) False G1192519
TU1360471 other upstream 480631 60205782 ~ 60208270 (-) True G1192519
TU1360489 other upstream 494015 60219166 ~ 60314554 (-) True G1192535
TU1360472 other upstream 553127 60278278 ~ 60331404 (-) False LOC110486987

Expression Profile