RNA id: TCONS_00043933


Basic Information

Item Value
RNA id TCONS_00043933
length 871
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_022254
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18032569 ~ 18057958 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAGCGTGTGACGTTTTCATTAATCACAGTAGAGGACGTCACCACGTGAAATCAACGGGCAGACATTAAATTACTCATCCAGGCTGAGAAAGAAGAGGCGGCAGAAATGGTAGACCTGGGCTTACTGACTGACGATCAGCTCAAAGCCAAACTGCTTCAATATGGTGTTAAAGCTGGACCCATTCTAGCGTCTACTAGATTTTTGTATGAAAAGAAGCTAAAGAGGCTGCTGGATTCTTCAGCACAGCACAAGATCAATGGTACAGCAGATGCAGGTCTCTATTCAGACAGTGAAGAAGAGGACGATGAGGAACAGGACTCTGATGAGGAACAGGACTCTGAGTCAGAGCAGCTTCTGTCTGAAACAAAGCCCCGGACGGAGACAAGCAAAACAGCAAGCAGAATGGGGACTTTCAGTCAGAGCAGAGATTTTTATCCACGCTGCTTCTTGCCCTCAGCTGGATTTGTAAATGGAAAGTCCACAGTGTCTGCCCAGAATGGTTCTTCGAGTAACAGCAGCTCCCCATACAGATCCTTCAGCATTACTGAGATGGTGGAAGAgATTGAGAACAGGTTCAGTCCTCAGTTCAAACAAACAGAGTCTGAGAGGTGGACTGGTTTGAGAGCCGCACAGACGGACTTGACGAGGCTGGATAAAGACACCATGACCAGCAAATCTCTTTGTTTAACATCTCCATCATCCCGTCAGAAACAGACCATCAGAGAACCTGCATCAGATGTGCTTTCAGAGATGTTCCCTGATGCTGAAAGAACCCCCACTGGAATCTTTGCTACAAAGAGAAGATCTATAAAGGGAGCTGCAGGCCGTCCCGTGCAGTTTAAATATCCTGAATTGCCTCTACTGAGTCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172987

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043926 lncRNA downstream 15348 18017200 ~ 18017871 (-) True XLOC_022252
TCONS_00044981 lncRNA downstream 147368 17881023 ~ 17885851 (-) True XLOC_022251
TCONS_00043920 lncRNA downstream 194021 17657994 ~ 17839198 (-) False XLOC_022247
TCONS_00044726 lncRNA upstream 15757 18073715 ~ 18074419 (-) True XLOC_022256
TCONS_00043941 lncRNA upstream 61896 18119854 ~ 18122655 (-) True XLOC_022257
TCONS_00044982 lncRNA upstream 324339 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00044983 lncRNA upstream 324339 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044984 lncRNA upstream 328829 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00043927 mRNA downstream 2820 18020928 ~ 18030399 (-) False XLOC_022253
TCONS_00043928 mRNA downstream 8676 18021094 ~ 18024543 (-) True XLOC_022253
TCONS_00043925 mRNA downstream 15273 17993791 ~ 18017946 (-) False XLOC_022252
TCONS_00043924 mRNA downstream 167119 17848993 ~ 17866100 (-) True XLOC_022250
TCONS_00043923 mRNA downstream 173600 17847040 ~ 17859619 (-) False XLOC_022250
TCONS_00043940 mRNA upstream 60577 18118535 ~ 18130264 (-) False XLOC_022257
TCONS_00043942 mRNA upstream 119323 18177281 ~ 18286822 (-) False XLOC_022258
TCONS_00043943 mRNA upstream 122941 18180899 ~ 18287618 (-) True XLOC_022258
TCONS_00043944 mRNA upstream 314090 18372048 ~ 18381361 (-) True XLOC_022259
TCONS_00043946 mRNA upstream 329031 18386989 ~ 18415872 (-) True XLOC_022261
TCONS_00043921 other downstream 350287 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 857001 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 986835 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043898 other downstream 1048625 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043893 other downstream 1054304 16977930 ~ 16978915 (-) False XLOC_022237
TCONS_00043939 other upstream 5215 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043945 other upstream 324498 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 552058 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 553169 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 701584 18759542 ~ 18777957 (-) True XLOC_022270

Expression Profile

//