RNA id: TCONS_00043944


Basic Information

Item Value
RNA id TCONS_00043944
length 1254
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_022259
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18372048 ~ 18381361 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gattggctggagacGCTCCTACGGCGCATAGTGACGCCACTGCTGGTACCCAAGCAGCTGCAGCGTGCGTGTGAAAATGGCGAACATCAGAAGTGTCAAGGGTATGGTGGGCTTGGTGACTGGAGGGGCCTCTGGTTTGGGTAGAGCTACAGTGGAGCGTCTCATCAAGCATGGGGCCAGTGCTGTGATCCTGGACCTGCCCAGTTCAGATGGACACAAGGTGGCCGCTGCTCTCGGGGACAGATGTGCATTTGCACCAACTGATGTCACATCAGAGTCAGATGTGAGATCGGCTCTTGATTTGGCGAAGGAGAAATATGGTAAAGTGGACTTGGCAGTGAACTGTGCTGGAATAGCTGTGGCTGTTAAAACATACAACTTTAAAAAGGACCTTCCTCACAGTCTAGAGGACTTCACACGTGTCATTACTGTGAACATCGCTGGGACATTTAATGTAATCAGACTGGCTGTAGGCGAGATGGGAAAGAATGAGCCTGATGCTGATGGACACCGAGGCTGCATCGTCAACACAGCCAGTGTGGCTGCTTATGATGGCCAGGTGGGTCAAGCTGCATACTCCGCCTCTAAGGGAGGCATTGTAGGAATGACTCTTCCTATCGCTCGAGACCTCGCTCCGATGGGCATTCGCGTGGTCACTATTGCCCCAGGCCTGTTCGCTACACCACTGCTAGCAGGTTTACCAGAGAAAGTGCAGAGTTTCCTAGCCAGACAGGTGCCCTTCCCGTCACGTCTGGGAGATCCAGCTGAGTTTGCACACCTTGTGACTTCAATAGCAGAAAACCCTATGATTAACGGTGAGGTGATCCGCCTGGATGGAGCCATTCGCATGCAGCCTTGAAGGGAAAAACTTAGAAACTCCAggtgaaatactcagaacagaacagaacattgGCTGAAGAATGTGTATTAATTATTTTCAGGATACTTTCAATCTGATTGAAAATGCTACTTTGAAtatgtgagtgtttttttttttttttttaaccactggAAATCTTGTAGATGGATGTATTCTTTGGTTGATGTGGTGTATAGTGACTGCACTGCTCTGCCATTGACTCTATGATCTGAACTATAGTAAATGCATTTCTACAAGCATCACTTTGCCATAAAAGCTAAATGTATCTGTCCACATATCGTTTCctgtaaaataaactgtaaatcaTTATATGGGTTGTAATGAATGAATCTAAGAAAAGCacaacttaaaataaacaaacaagctgaATGGTT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation
ko05010 Alzheimer disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03029 Mitochondrial biogenesis
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-041010-201 Predicted to enable oxidoreductase activity. Is expressed in central nervous system; endoderm; head; immature eye; and paraxial mesoderm. Human ortholog(s) of this gene implicated in chromosome Xp11.22 duplication syndrome; pheochromocytoma; and syndromic X-linked intellectual disability type 10. Orthologous to human HSD17B10 (hydroxysteroid 17-beta dehydrogenase 10).

Ensembl:

ensembl_id ENSDART00000016891

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043941 lncRNA downstream 249393 18119854 ~ 18122655 (-) True XLOC_022257
TCONS_00044726 lncRNA downstream 297629 18073715 ~ 18074419 (-) True XLOC_022256
TCONS_00043938 lncRNA downstream 314136 18038074 ~ 18057912 (-) True XLOC_022254
TCONS_00043926 lncRNA downstream 354177 18017200 ~ 18017871 (-) True XLOC_022252
TCONS_00044981 lncRNA downstream 486197 17881023 ~ 17885851 (-) True XLOC_022251
TCONS_00044982 lncRNA upstream 936 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00044983 lncRNA upstream 936 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044984 lncRNA upstream 5426 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00043951 lncRNA upstream 190298 18571659 ~ 18572645 (-) True XLOC_022263
TCONS_00043952 lncRNA upstream 192860 18574221 ~ 18578522 (-) False XLOC_022264
TCONS_00043943 mRNA downstream 84430 18180899 ~ 18287618 (-) True XLOC_022258
TCONS_00043942 mRNA downstream 85226 18177281 ~ 18286822 (-) False XLOC_022258
TCONS_00043940 mRNA downstream 241784 18118535 ~ 18130264 (-) False XLOC_022257
TCONS_00043936 mRNA downstream 314136 18035578 ~ 18057912 (-) False XLOC_022254
TCONS_00043934 mRNA downstream 314197 18033264 ~ 18057851 (-) False XLOC_022254
TCONS_00043946 mRNA upstream 5628 18386989 ~ 18415872 (-) True XLOC_022261
TCONS_00043947 mRNA upstream 176848 18558209 ~ 18567088 (-) False XLOC_022262
TCONS_00043948 mRNA upstream 179505 18560866 ~ 18568522 (-) True XLOC_022262
TCONS_00043949 mRNA upstream 187930 18569291 ~ 18572685 (-) False XLOC_022263
TCONS_00043950 mRNA upstream 187947 18569308 ~ 18572521 (-) False XLOC_022263
TCONS_00043939 other downstream 308749 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043921 other downstream 689116 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 1195830 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 1325664 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043898 other downstream 1387454 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043945 other upstream 1095 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 228655 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 229766 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 378181 18759542 ~ 18777957 (-) True XLOC_022270
TCONS_00043968 other upstream 488055 18869416 ~ 18870756 (-) False XLOC_022272

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05191382_05196348.mRNA True 1060 mRNA 0.49 6 CI01000001 5191059 ~ 5196348 (-)