RNA id: TCONS_00043948


Basic Information

Item Value
RNA id TCONS_00043948
length 3429
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_022262
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18558209 ~ 18568522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACATCAAACACGCTCTCTGCTCTCTCCGGCAGGATCAGTCATTTCGTAAAACGcctcatctttttttcttttaccacCTCTTCATCTGCATGAGGAATACATACTGATTTTACCATGTCGGGTTCCGAGCCACCGTCAGGGGACTCTGGTGGAGCGGGAGGGTATGCAGTCTTTTACCCGGCGGGATACCAGGCGTTGAACCCGGAGGAGCACGGCCTAGACCGCGGCTTCCGACTCACGGCCTTCTCTGATATGAAAGGATGAGGGTGTAAAGTCCCGCAGGAGACTCTGCTCAAACTCCTGCAGGGACTGGAGCCTGACCGGCCGCCCGGAGAGGATGGCGGTTTGGGGACGGGTGTTGGAGACGAAACCGCTGACTTTGGGCTTGTTTCGGCTGCTCAGGGTCCTCGACTAGGTATTGGAATGGACTCATGTGTGATCCCACTAAGACATGGAGGTCTCTCCCTGGTCCAAACCACAGATTTCTTCTATCCTTTAGTGGAGGACCCTTACATGATGggacGAATCGCCTGTGCAAATGTCCTGAGTGATCTGTACGCCATGGGCATCACAGAGTGTGACAACATGCTCATGCTCCTCAGTGTCAGTCAGAAGATGAACGAGAAGGAGAGAGATTTGGTGTTGCCTTTAATGATGAAGGGTTTCCGTGATGCGGCGGAGGAAGGCGGGACTTCAGTCACTGGAGGACAAACAGTCATCAATCCCTGGATCATAATTGGGGGCGTGGCTTCTGTGGTCTGCCAGCCCAATGATTTCATTTTGCCTGACGGGGCTGTACCTGGGGATGTGTTGGTTCTCACAAAACCTCTGGGAACTCAAGTAGCAGTGAATGCCCATCAGTGGCTGGATATAcctgagAAATGGAATAAGATAAAATTGGTGATTTCCAGGGAGGAAGTGGAGCAAGCCTATCAGGAGGCTATGCTCAATATGGCCACCCTCAATCGCACTGCTGCTGCCTTAATGCACAAATTTAATGCACACGCTGCCACAGACATCACTGGGTTTGGGATCATTGGTCATGCACGAAATCTGGCCAAGCAGCAGAAAAACGATGTTGCCTTTGTCATTCACAACCTTCCCATTATCTCTAAAATGGCCGCGATCAGCAAAGCTGGTGGAAACCTGTTTGGGCTTTTGCAGGGCACATCTTCCGAAACATCAGGTGGTCTGTTGATCTGTTTGCCACGGGAGCAAGCAGCCCGGTTTTGCGCAGAGATGAAATCCAGCCGCATGGGTTTGCTGGGAGCTGGGCAGGATGGAGGGGTGGGCGATGGGCAACAAGCTTGGATCATTGGCATCGTGGAGAAGGGCAATCGCTGCGCCCGCATCATTGACAAACCTCGGATCATAGAGGTCCCGTaccgtggctcagtggtcagcgtGCAGGAAGGGAGCAACAATAATGCCAGTCCTCCTGAGGTGCAGCTGGCATAAGAACTGCACACTGCCACAGAGAGTCTCTTTACTCCTGACCCTCATCATATCCTCAGTGAGAATGATTGATTTGAACGTGTGCGTGTCCATTATGTTTGTGTGAAGCACAGCGTAATATGTGGCTAACTCCTGCTGTCCATTTCCTCCCCCTGTTCAGCCAAAAGGCTGAGAGCAACAgaccaaaaatgttttaatttacctGGTGGGAGATGGAATGGACAACAAGCAAATGTATTTACATCTATCATTCTTTTCTTCAGCTCAGGCACACACCCCTtcactctgttgtttttttttttaggctgaGCCATTTTTCACGTTTACCAGTTGTTCTTGAAGTAGATATTTCACccaaacttttatttattcactctcatGTTGCTTTAAATCTGTGTGCTGCGATATTGTGAAACACAAACCAAGGAATAGGTTTTTATACAACAAATCATAGTTACCATGACTATAAAAACATCATGCAGAGTTGCTCTTTTTCACTGGGGTCTTTTAAACCCAACCATTGCAAAaagggatttttttaaaaacttaaccTTTAAACACAGCATAGTGATGACTGCTTTCTTAAGTTAACATAATTGTATTAATAAGATTAACAAGATTGTATTTATGCTTAAAATAGACAAAATGTTAATGGGGAAAAGAAAGTGGACATTTTCTGTTGAAATAACTCACTCTTCTACAGACAATAGACAACTTTGAAAGGCATTTTCTTGTTCAATTTAGGGTAAATCTTATCTGTGTGCTGAAAAATGAATGTAAAGGTATTTGTACTGGACATCAAAAAATATTGAGTAGAAATATAACATGTTTTTCTGTGAAAATACTTTTAAAGGTTAAAAACTTGACGAGTAATATAGTTTTTGGGTTTATATGAAAAAAGACTATTTTCTGTTCCTCTAAAAAAATAACAGCATACAGACTTGGAACAtgaaggtgaataaataatgaatacaattttgggtgaactagtttTCCCCCTAAAAAGGTTTGACCACAGACAGTTCTGATGACTATTTTTCCCTGCTAGAAAATAGTTTGAAACCTTATCCAGAGCTTAATTGTTTCATCTTTATAAGGTTCTGCATTTTGTGGCCACATGCTAAAATAAAGCCGGGTTGCCTAAGAAAACATTCCAATGAGTTCCCGATCTACCCAACATAAAGATCCTAAAATGACAATCAAATGTTTTCGTTTAAGCCATCTGACAAAACGTGTCAAATCTGGACACGCTGTCACAAATGTATCCCGGGGACGTAGGTTAAATTGAGATATTTAATGGTACAATCAATATTTATTTAGTGTCAGATTTAAATGCAGTCATCCAAATTTCaagtgaatattttttttcttttcatattttcgTGTGTTTATTTTGTACTGTCCGCATCTGAATCATCTAGTTTTAATAGGACATCTGTGTAACATTGACATGCCTGGTGAAATTAGCGTAGGGTTTTCTCTAGTGGGTGATTCTCCTGAATGCGGTGAGCATATGCCGGTTAGAGTAAGTTAGACTGGTTCTTTGTTCAATAGAATATGCACAACATGTGTCATGGTTTTAGAGGCAGCAGATAATTATGAATGAAATGGATGATGTGTGTGCGGTGTAAACTCTTTCTTCTGCtcaaaaccagcagactgagggaGAGAAAATAAAGGCAGTCTGGTTCTCCCGCTTGCATCTGAGAAAGGGTTGAGCAGCTTTCTCTGGTCCAGCAGTTGAGAGCCCAGAATGCCAGTTGTGCCGTTTGAATGTGTGTAACAGAACAGCAGTGTCCAGTGTCCTCTTTATGACACCTCTCTCTTTAACCCCAGCTAATGGGACGGGTGAGGTTGATGTTAGAAAGGAATGGATAGGCTGATCTTTCCATTCATTCACCTGGCTCTAGTCTTTTCATCGCAGCTTCCATTCTTTAAACATTGTGACTCAATAAAGCTGTAATTTCTCTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000004655

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044984 lncRNA downstream 168576 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00044983 lncRNA downstream 175698 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044982 lncRNA downstream 175699 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00043941 lncRNA downstream 438211 18119854 ~ 18122655 (-) True XLOC_022257
TCONS_00044726 lncRNA downstream 486447 18073715 ~ 18074419 (-) True XLOC_022256
TCONS_00043951 lncRNA upstream 3137 18571659 ~ 18572645 (-) True XLOC_022263
TCONS_00043952 lncRNA upstream 5699 18574221 ~ 18578522 (-) False XLOC_022264
TCONS_00044727 lncRNA upstream 300695 18869217 ~ 18870954 (-) False XLOC_022272
TCONS_00044985 lncRNA upstream 300894 18869416 ~ 18884382 (-) False XLOC_022272
TCONS_00043972 lncRNA upstream 336152 18904674 ~ 18913072 (-) False XLOC_022273
TCONS_00043946 mRNA downstream 144994 18386989 ~ 18415872 (-) True XLOC_022261
TCONS_00043944 mRNA downstream 179505 18372048 ~ 18381361 (-) True XLOC_022259
TCONS_00043943 mRNA downstream 273248 18180899 ~ 18287618 (-) True XLOC_022258
TCONS_00043942 mRNA downstream 274044 18177281 ~ 18286822 (-) False XLOC_022258
TCONS_00043940 mRNA downstream 430602 18118535 ~ 18130264 (-) False XLOC_022257
TCONS_00043949 mRNA upstream 769 18569291 ~ 18572685 (-) False XLOC_022263
TCONS_00043950 mRNA upstream 786 18569308 ~ 18572521 (-) False XLOC_022263
TCONS_00043953 mRNA upstream 5752 18574274 ~ 18597704 (-) False XLOC_022264
TCONS_00043954 mRNA upstream 6197 18574719 ~ 18595020 (-) False XLOC_022264
TCONS_00043955 mRNA upstream 6197 18574719 ~ 18595025 (-) False XLOC_022264
TCONS_00043945 other downstream 178315 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043939 other downstream 497567 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043921 other downstream 877934 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 1384648 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 1514482 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043958 other upstream 41494 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 42605 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 191020 18759542 ~ 18777957 (-) True XLOC_022270
TCONS_00043968 other upstream 300894 18869416 ~ 18870756 (-) False XLOC_022272
TCONS_00043969 other upstream 302068 18870590 ~ 18884382 (-) False XLOC_022272

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05288832_05293421.mRNA True 3234 mRNA 0.41 8 CI01000001 5286756 ~ 5293421 (-)
mexican tetra (Astyanax mexicanus) TU181574 True 1267 TUCP 0.52 6 NC_035911.1 24323495 ~ 24328327 (+)