RNA id: TU1555729


Basic Information

Item Value
RNA id TU1555729
length 1093
lncRNA type sense_over
GC content 0.47
exon number 7
gene id LOC110491794
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29412470 ~ 29423653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTATAACTGCTGAATTTAAGAATGCTCAACAccagttgaatatggccggtgtcagtaaacgttggcaaaatgCGTAATTATATTGTTGCCaatagcacagttacagtcaccaacgctctggataacacgAAAACAGCCTAATCAGCTCTACTTGGCAGGTACGGACAGAGATTATCACACTACTGTCAATGGACTGGAATAAGAGGAAGTTCACCAACATGGATCGCATGTAATACTCGTCTGAAGaggtggaccaagatgcagcgtgggAATGTCAAAAGACTGGAGGAGACCAGCTTTGCGAAAAGCGGGAAGAGCTAGATATCAACACCGCTGTGCTACAGGAGTGGATTACTGAGGTCCAGCAGTGGCCTGATGACACACTTCAGGATCGTCAGACGGGGCATCTCCAGAAGAAGCTTGAAGGGCTTTACCACAGTGTGAAAGAGGAAACTACCTCTACCATTTGACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATGTAGgagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1555448 lncRNA downstream 19264 29392297 ~ 29393300 (-) True G1360981
TU1555437 lncRNA downstream 28950 29383410 ~ 29383614 (-) True G1360970
TU1555430 lncRNA downstream 34239 29377892 ~ 29378325 (-) True G1360963
TU1555415 lncRNA downstream 50214 29362149 ~ 29362350 (-) True G1360948
TU1555405 lncRNA downstream 57538 29354809 ~ 29355026 (-) True G1360938
TU1555737 lncRNA upstream 238 29423809 ~ 29424130 (-) True G1361234
TU1555776 lncRNA upstream 38537 29462108 ~ 29462587 (-) True G1361271
TU1555783 lncRNA upstream 57058 29480629 ~ 29480876 (-) True G1361278
TU1555794 lncRNA upstream 71180 29494751 ~ 29495231 (-) True G1361287
TU1555795 lncRNA upstream 72197 29495768 ~ 29496001 (-) True G1361288
XR_005036500.1 mRNA downstream 645562 28626132 ~ 28767002 (-) True afap1l2
XM_036946702.1 mRNA downstream 645563 28626132 ~ 28767001 (-) False afap1l2
XM_036946700.1 mRNA downstream 645564 28626132 ~ 28767000 (-) False afap1l2
XM_036946701.1 mRNA downstream 645564 28626132 ~ 28767000 (-) False afap1l2
XM_036946703.1 mRNA downstream 647949 28626132 ~ 28764615 (-) False afap1l2
XM_021565563.2 mRNA upstream 251246 29674817 ~ 29702593 (-) True LOC110491798
XR_002469089.2 mRNA upstream 431606 29855177 ~ 29863073 (-) False LOC110492894
XR_005036503.1 mRNA upstream 431606 29855177 ~ 29873582 (-) False LOC110492894
XM_021567341.2 mRNA upstream 532035 29955606 ~ 30134001 (-) False LOC110492868
XM_036946709.1 mRNA upstream 532035 29955606 ~ 30543872 (-) False LOC110492868
TU1554186 other downstream 1231624 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 1248337 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 1884427 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 2053002 27357284 ~ 27359562 (-) True G1359321
TU1553462 other downstream 2299163 27112234 ~ 27113401 (-) True G1359119
TU1555797 other upstream 73542 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 500300 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 2215866 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 2462178 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 2595223 32018794 ~ 32019498 (-) True G1364348

Expression Profile