RNA id: TU1555430


Basic Information

Item Value
RNA id TU1555430
length 434
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1360963
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29377892 ~ 29378325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTgaaggaattatacaatgatCTGATCTGACTGCTATGAACTGTGtctgcgtgtgatcaggggtgtattcattccgctgattctgttgaaaagaaaaatggaagcaaacggaacaaaactggaataaacatacctgaatttgtctaaaataaactcttgtttgcagctgttggactaatgattacaccatagaacagctagatgcaggcaagattatgcaaggcggtattgaatgtgtcaatgtctgtcaccttgattactaaaATGTAtcttgacctgtgcacctacgttgtaaactttcattcataggcttgtaacaacctcatgatgggtacagggaaaatgtGACTATCATGTAGTAGTCTTAACCTCTCGATGttcattgagctgggtgaatggaatgtgaatgacatgctgtaatagaaataaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1555415 lncRNA downstream 15542 29362149 ~ 29362350 (-) True G1360948
TU1555405 lncRNA downstream 22866 29354809 ~ 29355026 (-) True G1360938
TU1555305 lncRNA downstream 147081 29230282 ~ 29230811 (-) True G1360840
TU1555251 lncRNA downstream 208151 29159033 ~ 29169741 (-) True G1360789
TU1555067 lncRNA downstream 404603 28968049 ~ 28973289 (-) True G1360619
TU1555437 lncRNA upstream 5085 29383410 ~ 29383614 (-) True G1360970
TU1555448 lncRNA upstream 13972 29392297 ~ 29393300 (-) True G1360981
TU1555727 lncRNA upstream 34239 29412564 ~ 29423571 (-) False LOC110491794
TU1555728 lncRNA upstream 34239 29412564 ~ 29416501 (-) False LOC110491794
TU1555729 lncRNA upstream 34239 29412564 ~ 29423571 (-) False LOC110491794
XR_005036500.1 mRNA downstream 610890 28626132 ~ 28767002 (-) True afap1l2
XM_036946702.1 mRNA downstream 610891 28626132 ~ 28767001 (-) False afap1l2
XM_036946700.1 mRNA downstream 610892 28626132 ~ 28767000 (-) False afap1l2
XM_036946701.1 mRNA downstream 610892 28626132 ~ 28767000 (-) False afap1l2
XM_036946703.1 mRNA downstream 613277 28626132 ~ 28764615 (-) False afap1l2
XR_002468900.2 mRNA upstream 34145 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA upstream 34145 29412470 ~ 29423653 (-) False LOC110491794
XR_002468903.2 mRNA upstream 34146 29412471 ~ 29423653 (-) False LOC110491794
XM_021565563.2 mRNA upstream 296492 29674817 ~ 29702593 (-) True LOC110491798
XR_002469089.2 mRNA upstream 476852 29855177 ~ 29863073 (-) False LOC110492894
TU1554186 other downstream 1196952 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 1213665 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 1849755 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 2018330 27357284 ~ 27359562 (-) True G1359321
TU1553462 other downstream 2264491 27112234 ~ 27113401 (-) True G1359119
TU1555797 other upstream 118788 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 545546 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 2261112 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 2507424 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 2640469 32018794 ~ 32019498 (-) True G1364348

Expression Profile