RNA id: XM_036959219.1


Basic Information

Item Value
RNA id XM_036959219.1
length 6672
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC110501806
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36552698 ~ 36837583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAACGCAGTAACCAGCGCAGGTCGTTATGTGAGCGAGACACAGCGAAGAGAGGAGATACCCTTCCAATGAGGTAGCCTGACGAATCAAGTAGAGCCCTCGAGTTTTGCGTGACATTTTGAACAAGTTGGAAAAAACATCAAAGGTTTCTAAAGGATAGAAcagccctctcagcccatccctgTAGCCACAGGACCATGTGCCAGTGATGACTAGCTGTTATATTCCAGAGTCCCACCTTGGCAGCTAGAGGAGAGGCTCCACCCCATCACCGTGATGGCAGCGTTGCCGCGGTACGCCACCCCCATGTCTGTGCCTGGCATGTTGCTCCTCCCCCTGCTCCTGCTGCCCCTCCCCATCGCGCTGTCCCAGAAactcctgctcctctccccacCCGACCCCACGCCCGCCTCCCTGTACCTTTCCCGGCCGGAGTGCACCCGGAGAGAGCACCCTGTGGTCACCTTCCAAGcCCTGAGTCCTTGGATCTCTATTTTCTCCCACCCGGGCGTGAGAGACTACTCCCAACTGACCCTTGATCTGACCAGGAATGAGCTGATAGTGGGTGCAAGAAACTTCCTCTTCAGATTGAGTCTCAACAACGTGTCTCTCATCCAGGCAACGGAATGGATTCCAGATGATGACACCAGGAGGTCTTGTCAGAGCAAAGGGAAGACCGAGGTAGAGTGTCAGAACTACCTCCGTGTGCTACTGGTCAATAAGACTGAGGTCATCACCTGTGGAACCAACGCCTTCCAGCCCCTCTGTATCACCCGGGAGGTGGGGAACATGTCCAGCGTGTTGGATCGTGTGAACGGAGTGGCACGGTGCCCGTATGACCCTCGCCATAACTCCACGGCGGTGGTGACGGAGAGTGGTGAGCTGTTCGCCGCCACTGTCATAGACTTTTCGGGTCGCGACCCCGTCATCTACCGGAGCCTAGGAGGCATGCCACCCCTTCGGACTGCCCAGTACAACTCCAAGTGGCTCAACGaACCCCATTTCATCTCAGCGTACGATGTGGGTCTCTTCACCTTTTTCTTTCTGCGTGAGAACGCCGTGGAACACGACTGTGGGAAGACTGTCTACTCCCGGGTGGCCCGGGTCTGTAAGAATGACATCGGAGGGCGGTTCCTACTGGAGGACACCTGGACCACCTTCATGAAGGCCAGGCTGAACTGCTCGCGCTCAGGAGAGATCCCCTTCTACTATAACGAGCTGCAGAGCACCTTCTATCTGCCTGAACAAGACCTCATCTATGGGATATTCACCACCAATGTgaacagtatagcaGCATCTGCAGTGTGTGCATTTAACCTTAGCTCCATCACCCAGGCCTTCAACGGGCCCTTCCGTTCCCAGGAGAACCCCCGCTCTACCTGGCTGCCCACCCCCAACCCCATCCCCAACTTCCAGTGTGGGACCATAGATGACGACGGCGGTCCTAACGATGGTCTGACGGAGCGCAGCCTCCAGGACGCCCAGCGGCTGTACCTGATGAACGACGTGGTGCAGCCCGTCTCTGTGGACCCCTTGGTCATGCAGGACGATGTGCGCTTCTCCAGGCTGGTAGTGGACATCGTACAGGGTCACGACACCCTCTACCACGTCATGTACATCGGCACAGAATACGGCACCATCCTGAAGGCCCTGGCCACCACCAATAAGAGCCTTCAGGGGTGTTACCTGGAGGAAATCCAGCTCCTCCCCCCTGGGGTGCGGGAGCCAATCCTGAACCTGCAGATCCTTCACAGTGATAGGTCACTGTTTGTAGGACTCAACAACAGAGTTCTGAAGATTCCATTGGAGAGATGCTCCAACTACAAGACTGAGACGCTATGCCTGGAGGCACGGGACCCCTACTGTGGCTGGGACAGAAAACAGAGAAGCTGCACCACTCTAGAGGACAGCTCCAACATGAGCCAGTGGAGTCAGAACATCACTGTGTGTCCGCTGAGGAACCAGACCACCAATGGCGTCTTTGGACCCTGGACGACGTGGCAACCATGCAGCAATGACGATGGCGACGGCACCAGCTCCTGTCTGTGTCGCTCCAGGGCGTGTGACAATCCCTCTGCACGTTGTGGTGGGAGGAACTGTGAGGGGTCCACCATCGAAGTCTCCAATTGCTCCAGAAACGGAGGATGGACACCATGGTCGTCATGGGGGCAGTGCAGCACCACCTGTGGAACAGGGTTTGAGATGCGCCAGCGCTCCTGCAACAACCCCTCGCCCCGACAtgggggacgtgtgtgtgtgggcccgATCAGGGAcgagagGTTCTGTAACGAGGGTGTGTCGTGTCCCCAGCCTATCTTCTGGTCCCTATGGGGTGCCTGGGCTAAGTGCAGTGCAGAGTGTGGAGGAGGGGTCCACTCCAGGGTCAGAAGCTGTGAGAACGGGAACAGCTGCCCAGGCTGCGCATTgGAATACAAGGCGTGTAACCTTGAGGCGTGTCCAGAGGTGAAGAGAAACACCCCTTGGACCCCGTGGATGCCTGTCAACGTGACGCTGGGCGGAGCACGCCAAGAGCAGAGGATGCGCTACATGTGCCGCGCCCAGCTGGCAGACCCCCACGAGCTGCAGATTGGACGACGCAAAGTAGAGACCCGCTTCTGCCCCAACGACGGCATGGCCACCTGCGAGACTGACACTCTGGTGGAGGACCTCCTGAGGACCCCTGTGGTACGAGTGGCGGGCTCCGGCTGGTCGTCATGGGAAACGTGGTCCGCCTGCTCCCAGGATTGTGCCAAAGGGTACCGTACCCGCAAGCGCACCTGTGCCACGCCAGAGGGCAAGGTTGCCCCCCCAGCCTGCAGGGGTTCGCCCGTAGAGTACCAAGACTGCAACTCTCAGGCCTGCTCAGTGAGTGGAGCCTGGTCCTGTTGGTCATCCTGGTCTCAGTGTTCGGTACCCTGTGGTGGAGGGCACTATCAGCGTACCCGCTCCTGTAACAACCCCAGCCCTGTCAACGGAGGAGATATCTGTATTGGCCTACACACTGAGGAAGCGCtgtgcaacacacacacctgtgacggcgGCTGGATGGCCTGGTCTCTGTGGTCAGCATGTGATGACGTAGGGCTGCAGGTACGCAGCCGGGTCTGTGGGGCTCAAGGCTCCGCCCCCTGTGTGGGAAACAGCACTGAGCACAGGGATTGCAACGAGATTCCAGtgATTCTCCCTGCGTCTGGCTTTGATAAGGACCAGCAATGCAGAGCATTCAGCTCTCTGCACCTGATAGCCACAGGCGTGTCTTGTTTCCTGGGGGCGGGCCTTCTGTCCTTCCTGGTCTATGTGTACTGTCAGCACTTCCACAAGCCCTCGCAGGAGTCTGCCGTCATACACCCAACCACACCCAACCACCTCAACTACAAGGGCAACACCACACCAAAGAACGAGAAGTACACGCCCATGGAGTTCAAGGTATTGTCACAGACTCTGAACAAGAACAACCTGCTCCCAGACGAGAGGTCTAACTTCTACCCAACGCCCCTGCAGCAAACTAACGTTTACACTACCACCTACTACCCCACAGCGCTGGGAAAATTCGACTACAACAggcctgactcctccccttccccttgCAGGACCTATAACCACAGCTGAGACACACACCCCAAGGACCCCAGCCTCACCTACCTACCCAGACTGAACTCCACCCCCATCGCCATGGTGACAAATGCCATGGTGACTGAACACAACCTAAGACCTGGATCTCATTTTTGCTCTCCTTTCCTTTATCCCATGGTATCGCCAAaatggtggggtgtgtgtgtataagggtaTACCTGGAACGTACTATCAGCACTCTGTAGGGGTGGATACAGTATGGATACTGATGCATCCCCTAGACTCACTAACTAGAGCCAGGAACCTGATCCTGGTACTGGACATCACAGTGTCAACGTAGTGCTTTGATGGAGAGCTGAATGATGAACTCCATAAGACACTATAAGCTACAGTAAGGATTTGGACAATGACTTATCCCTGTGGAACTTGACAACCTGATCGCCTTACTGTGGGTGTTGTGCTATTCAGAGAGGCTAGAGGTGGCTTTAAGAGATACTCAAAATGGCCACATCTtctcctctctggtctgtctggtcacCTCTATGAATGAGTCTCTATGACACCAACATCCCCTCTGTCTGCAGCTTTTATCCCCATTCTAAACTCAGAATTCTCCCAACAACAAGTTACCGGGAACATCCCAACCGGCGCATATCCTGGTGTCTGTCCTTGCTTCAGTGCGGTGGTTGCAAATCATGAGGAAACCAAAAAAATGACTAAATTAATTCAAGAGATCAGGAGGCCAATATCAGTTCTATTGTGTTTGGAGGTAGATGGATGAATGCACTCAGCTCACCTCATCACATGACATGAGGAGGACAAGAACCTGGGACTTCAGCTCTGCCATGTTTTTGGGTGGTACTAGAGGACCAGGGGAACAGAGGCACATCCATGGATGGCAGCGTGTGATCGGTTATGGACAAAACACTACCTATATTGgtccacacagatacagacatacTCATTGCTGGATAGACTCTAGTTTTAATCTGCTTATGTCCAAACAAGGCCCCACACATCAGGCTGCCTAGCTATGTTATGTAATGTATAGGTAGGCTTCCCAGGGAATGATCTGAACATGGGATAGAGATCTGAGGTGTCTGACTGAGAGAGTTGGAATCAGTTGACGGGATACAGTTGGTACAGCTTTGGGTTGCCTCGGGTGCCTGTCTGTATGCAAAAGAGGGGATAATGTGGGGTCAGATTATATAAAGACTTCTAGAATGAAATGGATGCATTCTACTGAGCACTGTACCTACCTACTACCGCTCAGTGTGGAGAACTGGACTGCAACCGCATTTTGATATGATATCATACAAGCTAGGATAATAAGCTAGTAGTGTGGCACCTTTTTTTTAAGTGGTTTTGTTATGAGGGAGGTTATTTGTTtaatgctagagagagagagagagaacagtagtaTAGGAGGAAAAGTTTTATTTCACAAATAATAGCTGATTCACTTTTTAGTTTCTCATCAGTTTCACATcacaaaatacaatatttttacatttttcaaaGCAGCTTAGTAGCCAATGTGTATCTGACATATTTTACAAAtaagaacaaaaaaataaaacacagattCATGTAGAAGCAAATATAAGTCTGACTGAATCAAATATTAATGGATCCCTCTCTTAACATTGCTAAATCATGCTTAGAAATACTTTGGTATGAGATTAATGTTTTgcttgtatgtgtatgtttgctTGCTTCGTATGTGTATGCCTGTGAGCTTGAATGAGGAGAGGAACAGACAACTCTGTATGTATTTTgtacaatgtaaatgtaatgcTTTATTACATATGACTGTATATGACGGGATCTGTAAAGGACTATGTGCATTTTTTCACACATAATGATGATGGCACTCCTGACGTTCCGCTGGGTTTCTGTGTGTTCCACGTATAAGATGTTAATCGTTGTAAGTTTATGGAGAGCTGCACGGTTCTCATGGGGAAGCTTGGATCATAAAGGAATTTGAGAAACACAACTGAGCTATATTTTCTTATTATGCCTGATGTTATGCTAATTCAGCAGCGATGCTTCTAGTTCCTCTCATAGAAATAGAAGGATTTTATTCTAtaattctaattctatagttccGCAATATGCACGAGAGCTCTATCTGTACATAAGAGACAGCCTTCGATCTGCAGACCATTAATGACATCTAAAGGTTAGTATAATGTAAATGTATATTATTGTATAGCTAAcactgttttttgttttgtttgttttgtttgaagcCTTATAGTTGTAAAAAAGTGCAGCAGCTATGTACACACCAACCATGGGGTTTGTAAGGGGATAGAGCTAGTCAATGTGACTGGTTGACTACGGCCTAGACATCTTTTCCAGGgatgtattcattccaccgattctgttgcaaaatgtttcgcAAACGGAATGAAACGAAGAGGGACGTacatgaatttgtccaataaaaacTCTTGTTTTTCTCTTTTGGCTTTCCGTTTGGGTCTTAAACGGTTTCCGTAATGAATACACAACAGCTGTTTTGTTACTTTGTGCAGATGTACAGTTTGGCTACATCTTGTGTAGTATCTTAGAGTAACAAAGACAGCCCGTCGTTTTAGAGGCACTTGTGCCAGTTTAACACAGAATCAATGTCACCAccacaataaaacatttataatGAAAAGCCCTACCttaataaaacatgtaaaataaGAACTTGATACAGCAAATGTACAACAAAGAGTCATGTAAATTAGATAAAAGTAATTATGCTGTTTAGAGGACTTAAAGTAACACTTCCATCCTGTGGTTTTCCTTTTCCACACATGCCTCACCCACGTTTCTTGGGTTTGTAATTGGCTCCCCTTAAATGGTGACTCCCTCTAATTTGCTTCCCCTGGCCCTGTAGTCACTTTTGATTGGACAAGCTGGATGTCACATTGTGGAGCTCTGTCCCCTGATTGGCTCGGTGCCCTTCTATGCAACTGACCTGGTGGTACTGTTAGATATGTGACATAGACTGTAATCACTGCCTTTTAGACACTGTGAATTTTTTGGTACTCTATATTTTTGTATATTGTACATTATAAAGGATAATAAACCTTGATGCCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2066356 lncRNA downstream 40248 36441701 ~ 36512450 (-) True G1806092
TU2066308 lncRNA downstream 207168 36343157 ~ 36345530 (-) True G1806050
TU2066268 lncRNA downstream 265342 36280386 ~ 36287356 (-) True G1806014
TU2066216 lncRNA downstream 304885 36243199 ~ 36247813 (-) True G1805967
TU2066234 lncRNA downstream 333227 36218741 ~ 36219471 (-) True G1805983
TU2066616 lncRNA upstream 1241 36838824 ~ 36858166 (-) True G1806343
TU2066631 lncRNA upstream 17041 36854624 ~ 36855249 (-) True G1806356
TU2066635 lncRNA upstream 76760 36914343 ~ 36917210 (-) True G1806358
TU2066663 lncRNA upstream 85022 36922605 ~ 36923054 (-) True G1806386
TU2066664 lncRNA upstream 85896 36923479 ~ 36923843 (-) True G1806387
XM_036959209.1 mRNA downstream 111336 36405741 ~ 36441362 (-) True hspbap1
XM_036959208.1 mRNA downstream 111338 36405741 ~ 36441360 (-) False hspbap1
XM_036959211.1 mRNA downstream 117756 36405741 ~ 36434942 (-) False hspbap1
XM_036959210.1 mRNA downstream 117777 36405741 ~ 36434921 (-) False hspbap1
XM_036959212.1 mRNA downstream 117780 36405741 ~ 36434918 (-) False hspbap1
XM_036959226.1 mRNA upstream 142513 36980096 ~ 37098305 (-) False LOC110501809
XM_036959224.1 mRNA upstream 142513 36980096 ~ 37099621 (-) True LOC110501809
XM_021579645.2 mRNA upstream 267902 37105485 ~ 37117837 (-) True hacd2
XM_021579653.2 mRNA upstream 520561 37358144 ~ 37390316 (-) True LOC110501816
XM_021579657.2 mRNA upstream 561487 37399070 ~ 37411510 (-) True LOC110501817
TU2066167 other downstream 492930 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 1332999 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 1425865 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 2012525 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 3592213 32958322 ~ 32960485 (-) False G1801331
TU2066670 other upstream 98075 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 205978 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 922388 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 1355839 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 1371207 38208790 ~ 38213187 (-) False G1807731

Expression Profile