RNA id: TU2066616


Basic Information

Item Value
RNA id TU2066616
length 1899
lncRNA type antisense_over
GC content 0.46
exon number 6
gene id G1806343
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36838824 ~ 36858166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAAGGACCTACTGTAGAATGCAGTGACTGAACTCAGTAGATAGTTGCACAATAGCTCTGCCTAAAAAGTGTACAAGCCGTCAAAACCTTGGATTCTCTACCCtactcctgaagtgtgcacttgtaaACTCCCTTTCATGGATTTAAAAGGAATGGACACGAGGAGAATATGCAATTAAGATTCTCCCAAGGGCTGCATTCTGATTCTCTATCCTCCTCCAGATGTTTACACTTGTTCACTCCCCCTAATGCATTTCAGAGGTCCATCCCCACTGACCTTCTCATCCGAATGGGGTttgaggaggcgaggagagaggagtatGCAACTGACATTCTCCCCGATTCTTCCTCTCCCAAGGttgctgacctctgacctcctccaATGTGCTTTGAAAGGGATCCTTTAGTCCTCCCAAAGCAGAGTTGTTAAGGCTGACTTATCAACAGATATACTAGGAGCAGGGGGTGGACAACACTGAGGTacactgtccatctctctctggctcttcATATGTATCACTTAAAGCAAAGCACCAATCAATCACTGTTGATATAACGATGGAAAACGCTTCTTACTGTGACACTTCCTGTACTTTTAAGTTCTAGAACTTGAAAACGTGATTTCTGACAAGCAAAACatgttgggactgtatcaacagtgaaCTAAGGAAACAAATATCAAAAGATAGATTGAGTGGTACCTAAGTGACCAGTCACTATGAGAGTAACTTCCAGACAACAGTTGCTGTCAAACATGCTCATCATCAGAAGACATTTTTTGAACATGCCTtttgatggacagagagagatcaatctGCACTCAGAGGGTCGGCTCTCCTCTTACCCTAATGCTTTATTCATCCTCCCTTCCTCACTTCCTGAAAGTCTCGTTCAGCAGAAGCTGTTGACACATCTACACCACTCAGCAACCCCCCAGGCATGATACGCCACCCAAAAATATAGGATAAAACAGAATGTTAGTTCATCAAAACACTGTTCAaaggtgtgtgtggatgtgtgtgtgccaTTTGTGTACAGAGCTGGGTTCTGACGGCGTGTCGGCCTCGCTGTTGGAAAGCCGTCTGTCTGAGAGTGCTGACTGCGGTCAGACCAACTCTCCCTTAAGAGACCGTGTTTGAACACAACCGACGTGAACTTCAGAGCTTTTCAGCTTTCTAAtgatcacctggtcagtctattgcTATGTGTTGTCAGCTTGGAATGTATCAAGATGACCACATTTAGTGGCAGGGAGGCTGGAGGGCAGAGTGGCGAGAATCTCTCCACTCCGACCTTTGATGGGAAGTTAGGGCATTTGTCAGTGGGTTGTTATGAACGGTTATTGTAAACTGAAAGGTCAACACTGTGCCAGGAAACACACATTCCCATGCAGAAGCACCTTGCTGTAAGGCGTTATTTCTGTACTTACTTTCTCAGTTTCTACATGAACAACATCTTTAGCTTCTGGGTTCTCTTCCCAAAGAGGAGCTCCCGTGGGGTCTTTTAAAAACGCCACCATGGACTTgtatgtagcaggtctgttgtaCTCTGTATGGAACGTCCCATCTTTATAATGCAGGAGATCTGCGCCATCACTTTTAGAGCTGGGATCTACCTTCACTTTCTTACACAGTTTCCGACCCTCCAAATCCCCACAGTTGACCCAAGCGATGGTGCCCTGTCCTTTGATAACCTGGGCCACATCAGACAGCAGCTTCAGCTTAGAGTCCCCGGAGGTAGCTGACTTAGTGTAGAGCACCAGGACATTGGTTCGAGTCCGGAGCAGCTTCTTGAAGTCCTTGTGTTCGCTGACCTTCTCTATGAGAGGAGAGACCTTTACAGCCGCCTGCAGCACCGGCACCAGGCACACCAAGAAGACGAATGTGTACATTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2066588 lncRNA downstream 48832 36789755 ~ 36789992 (-) True G1806316
TU2066444 lncRNA downstream 180847 36569614 ~ 36657977 (-) True G1806177
TU2066474 lncRNA downstream 226302 36612218 ~ 36612522 (-) True G1806206
TU2066356 lncRNA downstream 326374 36441701 ~ 36512450 (-) True G1806092
TU2066308 lncRNA downstream 493294 36343157 ~ 36345530 (-) True G1806050
TU2066635 lncRNA upstream 56177 36914343 ~ 36917210 (-) True G1806358
TU2066663 lncRNA upstream 64439 36922605 ~ 36923054 (-) True G1806386
TU2066664 lncRNA upstream 65313 36923479 ~ 36923843 (-) True G1806387
TU2066672 lncRNA upstream 81235 36939401 ~ 36939670 (-) True G1806395
TU2066678 lncRNA upstream 86699 36944865 ~ 36945458 (-) True G1806401
XM_036959216.1 mRNA downstream 1241 36552698 ~ 36837583 (-) False LOC110501806
XM_036959217.1 mRNA downstream 1241 36552698 ~ 36837583 (-) False LOC110501806
XM_036959218.1 mRNA downstream 1241 36552698 ~ 36837583 (-) False LOC110501806
XM_036959219.1 mRNA downstream 1241 36552698 ~ 36837583 (-) False LOC110501806
XM_036959220.1 mRNA downstream 1241 36552698 ~ 36837583 (-) False LOC110501806
XM_036959226.1 mRNA upstream 121930 36980096 ~ 37098305 (-) False LOC110501809
XM_036959224.1 mRNA upstream 121930 36980096 ~ 37099621 (-) True LOC110501809
XM_021579645.2 mRNA upstream 247319 37105485 ~ 37117837 (-) True hacd2
XM_021579653.2 mRNA upstream 499978 37358144 ~ 37390316 (-) True LOC110501816
XM_021579657.2 mRNA upstream 540904 37399070 ~ 37411510 (-) True LOC110501817
TU2066409 other downstream 260113 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 779056 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 1619125 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 1711991 35126479 ~ 35126833 (-) True G1803964
TU2063359 other downstream 2298651 34518506 ~ 34540173 (-) True bard1
TU2066670 other upstream 77492 36935658 ~ 36936087 (-) True G1806393
TU2066735 other upstream 185395 37043561 ~ 37112474 (-) True G1806449
TU2067385 other upstream 901805 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 1335256 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 1350624 38208790 ~ 38213187 (-) False G1807731

Expression Profile